Analysing Inbreeding Based on Genetic Markers

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Documentation for package ‘inbreedR’ version 0.3.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

inbreedR-package	inbreedR: Workflows for analysing variance in inbreeding and HFCs based on SNP or microsatellite markers.
bodyweight	Oldfield mouse bodyweight data
check_data	Checks the data for consistency with the inbreedR working format.
convert_raw	Genotype format converter
g2_microsats	Estimating g2 from microsatellite data
g2_snps	Estimating g2 from larger datasets, such as SNPs
HHC	Calculates heterzygosity-heterozygosity correlations with standardized multilocus heterozygosities (sMLH)
inbreedR	inbreedR: Workflows for analysing variance in inbreeding and HFCs based on SNP or microsatellite markers.
MLH	Calculate multilocus heterozygosity (MLH)
mouse_msats	Oldfield mouse microsatellite data
mouse_snps	Oldfield mouse SNP data
plot.inbreed	Plot an inbreed object
print.inbreed	Print an inbreed object
r2_hf	Expected r2 between standardized multilocus heterozygosity (h) and inbreeding level (f)
r2_Wf	Expected r2 between inbreeding level (f) and fitness (W)
simulate_g2	Simulate g2
simulate_r2_hf	Calculates the expected squared correlation between heteorzygosity and inbreeding for simulated marker sets
sMLH	Calculate multilocus heterozygosity (MLH)