Linking Singe-Cell Transcriptomes Atween Contemporary Subpopulation Genomes


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Documentation for package ‘liayson’ version 1.0.4

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aggregateSegmentExpression Aggregating genes across copy number segments.
assignCellsToClusters Assigns cells to previously defined clones.
clusterCells Grouping cells into clones.
cnps Segment-by-cell matrix of copy number states from NCI-N87 cell line.
epg Gene-by-cell matrix of expression from NCI-N87 cell line.
eps Segment-by-cell matrix of expression from NCI-N87 cell line.
getNumRes Clone size resolution.
runLIAYSON Main Function.
saveClusteredCells Saving clones to user-defined output.
segmentExpression2CopyNumber Calling CNVs.
segments Bulk copy number profile of NCI-N87 cell line.