collate_dat |
Collate Vortex .dat or .stdat output files into one data.frame |
collate_one_dat |
Collate one local Vortex output file into a data.frame |
collate_proc_data |
Collate processed data generated by any of the 'collate' functions |
collate_run |
Collate Vortex .run output files |
collate_yr |
Collate Vortex .yr output files |
CompileIter |
Compile iterations from one .yr file |
conv_l_yr |
Convert 'census' data into long format |
df2disk |
Save a data.frame as both Rdata and CSV |
dot_plot |
Dot plots of mean Vortex parameters |
fit_regression |
Search for the best regression model(s) |
get_file_paths |
Return file paths of files matching a pattern in a directory |
line_plot_year |
Line plots of Vortex parameters vs years |
line_plot_year_mid |
Line plots of Vortex parameters vs years |
lookup_table |
Summary table of simulation parameters |
m_scatter |
Generates a matrix of scatter plots |
Nadults |
Calculate the harmonic mean of the total number of adults |
Ne |
Calculate the effective population size (Ne) |
pac.clas |
Collated results from Vortex scenarios - Pacioni et al. (2017) |
pac.clas.lookup |
Look-up table |
pac.clas.Nadults |
Harmonic mean of adults and population sizes |
pac.clas.Ne |
Effective population size |
pac.clas.pairw |
Results of pairwise comparisons of simulation scenarios |
pac.lhs |
Collated results from Vortex scenarios - Pacioni et al. (2017) |
pac.run.lhs |
Collated results from Vortex scenarios - Pacioni et al. (2017) |
pac.yr |
Collated results from Vortex scenarios - Pacioni et al. (2017) |
pairwise |
Pairwise comparisons and ranks of scenarios |
Pextinct |
Cumulative probability of extinction at the end of the simulation |
PrefixAndRepeat |
Return a prefixed and repeated string of character |
pval |
Calculates p-values from z-values |
rRec |
Calculate the mean recovery rate (Pacioni et al 2017) and compare scenarios |
se2sd |
Standard Error from a vector |
SSMD_matrix |
Generate a SSMD matrix with all possible pairwise comparisons |
sta.evy5 |
Collated results from Vortex scenarios - Campbell et al (2016) |
sta.evy5.b11 |
Collated results from Vortex scenarios - Campbell et al (2016) |
sta.main |
Collated results from Vortex scenarios - Campbell et al (2016) |
vortexR |
vortexR: an R package for Post Vortex Simulation Analysis |