Last updated on 2024-04-27 17:54:06 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.0 | 9.61 | 129.78 | 139.39 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.4.0 | 9.50 | 94.19 | 103.69 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.4.0 | 184.43 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4.0 | 179.85 | OK | |||
| r-devel-windows-x86_64 | 1.4.0 | 12.00 | 109.00 | 121.00 | OK | |
| r-patched-linux-x86_64 | 1.4.0 | 12.08 | 124.58 | 136.66 | OK | |
| r-release-linux-x86_64 | 1.4.0 | 13.79 | 133.78 | 147.57 | OK | |
| r-release-macos-arm64 | 1.4.0 | 57.00 | OK | |||
| r-release-macos-x86_64 | 1.4.0 | 97.00 | OK | |||
| r-release-windows-x86_64 | 1.4.0 | 13.00 | 106.00 | 119.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.0 | 49.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.4.0 | 94.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.4.0 | 16.00 | 137.00 | 153.00 | OK |
Version: 1.4.0
Check: examples
Result: ERROR
Running examples in ‘CleanBSequences-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: DNAStringSetOPR
> ### Title: Curing of biological sequences
> ### Aliases: DNAStringSetOPR
>
> ### ** Examples
>
> SEQs = readDNAStringSet(system.file("sequences","SeqInputOPR.fasta", package = "CleanBSequences"))
> PrimerR= DNAString ("GACTGCGTACCATGC")
> DNAStringSetOPR (SEQs,PrimerR)
DNAStringSet object of length 2:
width seq names
[1] 116 GCCTCGCCTCCCTCTTTGATCAG...CCTTTGCAATCTTCACAAGGTGG 170522-033_K03_11...
[2] 113 GTCTACTCGATCGTGATCCGGTA...CCTTTGCAATCTTCACAAGGTGG 170522-033_C05_15...
Error in .load_package_gracefully("pwalign", "Starting with BioC 3.19, ", :
Could not load package pwalign. Is it installed?
Note that Starting with BioC 3.19, calling pairwiseAlignment() requires
the pwalign package. Please install it with:
BiocManager::install("pwalign")
Calls: DNAStringSetOPR ... pairwiseAlignment -> .call_fun_in_pwalign -> .load_package_gracefully
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc