Last updated on 2024-05-12 17:55:48 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 10.43 | 82.38 | 92.81 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 6.61 | 61.15 | 67.76 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 114.85 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | 157.23 | OK | |||
| r-devel-windows-x86_64 | 1.1.1 | 10.00 | 123.00 | 133.00 | OK | |
| r-patched-linux-x86_64 | 1.1.1 | 5.86 | 78.99 | 84.85 | OK | |
| r-release-linux-x86_64 | 1.1.1 | 4.81 | 77.45 | 82.26 | OK | |
| r-release-macos-arm64 | 1.1.1 | 99.00 | OK | |||
| r-release-macos-x86_64 | 1.1.1 | 143.00 | OK | |||
| r-release-windows-x86_64 | 1.1.1 | 9.00 | 124.00 | 133.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.1 | 109.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.1 | 139.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.1 | 11.00 | 140.00 | 151.00 | ERROR |
Version: 1.1.1
Check: tests
Result: ERROR
Running 'testthat.R' [58s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(otargen)
>
> test_check("otargen")
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [48ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [599ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [16ms]
\ Downloading data for ENSG00000163946 ...
v Downloading data for ENSG00000163946 ... [472ms]
\ Downloading data for ENSG00000169174 ...
| Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [240ms]
\ Downloading data for ENSG00000143001 ...
v Downloading data for ENSG00000143001 ... [186ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [242ms]
\ Downloading data for ENSG00000141510 ...
v Downloading data for ENSG00000141510 ... [539ms]
\ Downloading data for ENSG00000163946 ...
v Downloading data for ENSG00000163946 ... [276ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [194ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [59ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [205ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [9ms]
\ Downloading data...
v Downloading data... [65ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [66ms]
\ Downloading data...
v Downloading data... [123ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
x Connecting to the Open Targets Genetics GrpahQL API... [56ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [25ms]
\ Downloading data for 1_154453788_C_T ...
v Downloading data for 1_154453788_C_T ... [234ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [81ms]
\ Downloading data for rs55808324 ...
v Downloading data for rs55808324 ... [213ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [15ms]
\ Downloading data...
v Downloading data... [88ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [11ms]
\ Downloading data...
x Downloading data... [86ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [11ms]
\ Downloading data...
v Downloading data... [121ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [16ms]
\ Downloading the data...
v Downloading the data... [67ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [10ms]
\ Downloading the data...
v Downloading the data... [63ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [10ms]
\ Downloading data...
v Downloading data... [66ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [11ms]
\ Downloading data...
v Downloading data... [683ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [10ms]
\ Downloading data...
v Downloading data... [259ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [15ms]
\ Downloading data...
v Downloading data... [172ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [16ms]
\ Downloading data for variant 1_55063514_G_A ...
v Downloading data for variant 1_55063514_G_A ... [123ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [67ms]
\ Downloading data for variant rs72698179 ...
v Downloading data for variant rs72698179 ... [161ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [16ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [217ms]
Selecting by Trait_reported_trimmed
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [14ms]
\ Downloading data for ENSG00000167207 ...
| Downloading data for ENSG00000167207 ...
v Downloading data for ENSG00000167207 ... [205ms]
\ Downloading data for ENSG00000096968 ...
v Downloading data for ENSG00000096968 ... [387ms]
\ Downloading data for ENSG00000138821 ...
v Downloading data for ENSG00000138821 ... [188ms]
\ Downloading data for ENSG00000125255 ...
v Downloading data for ENSG00000125255 ... [146ms]
Selecting by Trait_reported_trimmed
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [76ms]
\ Downloading data for ENSG00000141510 ...
v Downloading data for ENSG00000141510 ... [602ms]
Selecting by Trait_reported_trimmed
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [224ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [165ms]
\ Downloading data for ENSG00000163946 ...
v Downloading data for ENSG00000163946 ... [274ms]
\ Downloading data for ENSG00000141510 ...
v Downloading data for ENSG00000141510 ... [571ms]
Selecting by Trait_reported_trimmed
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [15ms]
\ Downloading data for ENSG00000167207 ...
v Downloading data for ENSG00000167207 ... [6.1s]
\ Downloading data for ENSG00000096968 ...
v Downloading data for ENSG00000096968 ... [6.2s]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [39ms]
\ Downloading data for ENSG00000167207 ...
x Downloading data for ENSG00000167207 ... [10.1s]
Error in test plot_l2g: Bad Gateway (HTTP 502)
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [15ms]
\ Downloading data...
v Downloading data... [829ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [27ms]
\ Downloading data for variant 14_87978408_G_A ...
v Downloading data for variant 14_87978408_G_A ... [128ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [87ms]
\ Downloading data for variant rs55808324 ...
v Downloading data for variant rs55808324 ... [237ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [15ms]
\ Downloading data...
v Downloading data... [139ms]
\ Connecting the database...
v Connecting the database... [10ms]
\ Downloading data...
v Downloading data... [81ms]
\ Connecting the database...
v Connecting the database... [199ms]
\ Downloading data...
v Downloading data... [101ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [11ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [5.1s]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [220ms]
\ Downloading data for ENSG00000169174 ...
v Downloading data for ENSG00000169174 ... [4.8s]
\ Downloading data for ENSG00000163946 ...
v Downloading data for ENSG00000163946 ... [5.3s]
\ Connecting to the Open Targets Genetics GrpahQL API...
x Connecting to the Open Targets Genetics GrpahQL API... [73ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [15ms]
\ Downloading data...
v Downloading data... [63ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [12ms]
\ Downloading data for GCST003044 , 14_88009660_C_T ...
v Downloading data for GCST003044 , 14_88009660_C_T ... [637ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [17ms]
\ Downloading data...
v Downloading data... [416ms]
\ Connecting the database...
v Connecting the database... [20ms]
\ Downloading data...
v Downloading data... [186ms]
\ Connecting to the Open Targets Genetics GrpahQL API...
v Connecting to the Open Targets Genetics GrpahQL API... [17ms]
\ Downloading data...
v Downloading data... [104ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [16ms]
\ Downloading data...
v Downloading data... [171ms]
\ Connecting to the Open Targets Genetics GraphQL API...
v Connecting to the Open Targets Genetics GraphQL API... [95ms]
\ Downloading data...
v Downloading data... [134ms]
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 79 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plot_l2g.R:23:5'): test plot_l2g works ───────────────────────
FALSE is not TRUE
`actual`: FALSE
`expected`: TRUE
An error occurred in plotting.
Backtrace:
▆
1. └─base::tryCatch(...) at test-plot_l2g.R:3:3
2. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
3. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
4. └─value[[3L]](cond)
5. └─testthat::expect_true(FALSE, "An error occurred in plotting.") at test-plot_l2g.R:23:5
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 79 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64