myTAI: Evolutionary Transcriptomics

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2017) <doi:10.1093/bioinformatics/btx835>). The aim of this tool is to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest (Drost et al. (2016) <doi:10.1101/051565>).

Version: 0.9.3
Depends: R (≥ 3.1.1)
Imports: Rcpp (≥ 0.12.0), nortest (≥ 1.0-2), fitdistrplus (≥ 1.0-2), parallel (≥ 3.1.1), foreach (≥ 1.4.2), doParallel (≥ 1.0.8), dplyr (≥ 0.3.0), RColorBrewer (≥ 1.1-2), taxize (≥ 0.6.0), methods (≥ 3.1.1), graphics (≥ 3.1.1), stats (≥ 3.1.1), grDevices (≥ 3.1.1), utils (≥ 3.1.1), reshape2 (≥ 1.4.1), ggplot2 (≥ 1.0.1), readr (≥ 0.2.2), tibble, scales, gridExtra, edgeR
LinkingTo: Rcpp, RcppArmadillo, cpp11
Suggests: knitr (≥ 1.6), rmarkdown (≥ 0.3.3), devtools (≥ 1.6.1), testthat (≥ 0.9.1), mgcv
Published: 2021-02-24
Author: Hajk-Georg Drost ORCID iD [aut, cre]
Maintainer: Hajk-Georg Drost <hajk-georg.drost at tuebingen.mpg.de>
BugReports: https://github.com/drostlab/myTAI/issues
License: GPL-3
URL: https://github.com/drostlab/myTAI
NeedsCompilation: yes
SystemRequirements: C++11
Citation: myTAI citation info
Materials: README NEWS
CRAN checks: myTAI results

Documentation:

Reference manual: myTAI.pdf
Vignettes: Advanced Phylotranscriptomics Analyses
Enrichment Analyses
Gene Expression Analysis with 'myTAI'
Intermediate Phylotranscriptomics Analyses
Introduction to the myTAI package
Retrieving Taxonomic Information

Downloads:

Package source: myTAI_0.9.3.tar.gz
Windows binaries: r-devel: myTAI_0.9.3.zip, r-release: myTAI_0.9.3.zip, r-oldrel: myTAI_0.9.3.zip
macOS binaries: r-release (arm64): myTAI_0.9.3.tgz, r-oldrel (arm64): myTAI_0.9.3.tgz, r-release (x86_64): myTAI_0.9.3.tgz
Old sources: myTAI archive

Linking:

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