# 'VigiBase' Pharmacovigilance Database Toolbox

## Documentation for package ‘vigicaen’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

add_adr | Add adverse drug reaction column(s) to a dataset
add_dose | Add drug dose column(s) to a dataset, in milligram per day
add_drug | Add drug column(s) to a dataset
add_ind | Add indication column(s) to a dataset
adr_ | Data of immune checkpoint inhibitors.
cff | Fast formatting of numbers
check_dm | Check binary variables
compute_dispro | Compute disproportionality
compute_interaction | Compute interaction disproportionality
compute_or_mod | Compute (r)OR from a model summary
create_example_tables | Example source tables for VigiBase and MedDRA
create_ex_main_pq | Example source tables for VigiBase and MedDRA
create_ex_main_txt | Example source tables for VigiBase and MedDRA
create_ex_meddra_asc | Example source tables for VigiBase and MedDRA
create_ex_sub_pq | Example source tables for VigiBase and MedDRA
create_ex_sub_txt | Example source tables for VigiBase and MedDRA
create_ex_who_txt | Example source tables for VigiBase and MedDRA
demo_ | Data of immune checkpoint inhibitors.
desc_cont | Summarise continuous variables
desc_dch | Dechallenge descriptive
desc_facvar | Summarise categorical variables
desc_outcome | Outcome descriptive
desc_rch | Rechallenge descriptive
desc_tto | Time to onset descriptive
drug_ | Data of immune checkpoint inhibitors.
dt_parquet | Read parquet and convert to data.table
extract_tto | Time to onset extraction
ex_ | Data for the immune checkpoint inhibitors example
followup_ | Data of immune checkpoint inhibitors.
get_atc_code | Get ATC codes (DrecNos or MPIs)
get_drecno | Get DrecNo from drug names or MedicinalProd_Id
get_llt_smq | Get low level term codes from SMQs
get_llt_soc | Get low level term codes from soc classification
ic_tail | Credibility interval limits for the information component
ind_ | Data of immune checkpoint inhibitors.
link_ | Data of immune checkpoint inhibitors.
meddra_ | Sample of MedDRA
mp_ | Sample of WHODrug
nice_p | Nice printing of p-values
out_ | Data of immune checkpoint inhibitors.
screen_adr | Screening of adverse drug reactions
screen_drug | Screening of drugs
smq_content_ | Sample of MedDRA
smq_list_ | Sample of MedDRA
smq_list_content_ | Sample of MedDRA
srce_ | Data of immune checkpoint inhibitors.
tb_meddra | Create MedDRA tables
tb_subset | Extract of subset of Vigibase
tb_vigibase | Create VigiBase ECL tables
tb_who | Create WHO tables
thg_ | Sample of WHODrug
vigi_routine | Display routine pharmacovigilance summary