Package: TBRDist
Title: Rearrangement Distances Between Unrooted Phylogenetic Trees
Version: 1.0.2
Authors@R: c(person("Martin R.", 'Smith',
                  email = "martin.smith@durham.ac.uk", 
                  role = c("aut", "cre", "cph"), 
                  comment = c(ORCID = "0000-0001-5660-1727")),
               person(given = "Chris", family = "Whidden",
                  email = "cwhidden@fredhutch.org", role = c("cph"))
            )
License: GPL (>= 3)
Copyright: Underlying C++ code copyright 2018 Chris Whidden.
Description: Fast calculation of the Subtree Prune and Regraft (SPR),
  Tree Bisection and Reconnection (TBR) and Replug distances between 
  unrooted trees, using the algorithms of Whidden and 
  Matsen (2017) <arxiv:1511.07529>.
URL: https://ms609.github.io/TBRDist/,
        https://github.com/ms609/TBRDist/,
        https://github.com/cwhidden/uspr/
BugReports: https://github.com/ms609/TBRDist/issues/
Depends: R (>= 3.4.0)
Imports: ape, Rdpack, TreeDist, TreeTools (>= 1.1.0)
Suggests: knitr, rmarkdown, testthat
LinkingTo: BH, Rcpp
SystemRequirements: C++11
RdMacros: Rdpack
VignetteBuilder: knitr
LazyData: true
ByteCompile: true
Encoding: UTF-8
X-schema.org-keywords: phylogenetics, tree-distance
Language: en-GB
RoxygenNote: 7.1.1
NeedsCompilation: yes
Packaged: 2020-09-17 09:11:58 UTC; ms609
Author: Martin R. Smith [aut, cre, cph]
    (<https://orcid.org/0000-0001-5660-1727>),
  Chris Whidden [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Repository: CRAN
Date/Publication: 2020-09-17 10:10:12 UTC
Built: R 4.6.0; aarch64-apple-darwin20; 2025-07-18 08:45:45 UTC; unix
Archs: TBRDist.so.dSYM
