# A 'Shiny' App to Analyze Accelerometer-Measured Daily Physical Behavior Data

## Documentation for package ‘activAnalyzer’ version 2.1.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

average_results | Average results over valid days
compute_accumulation_metrics | Compute activity accumulation metrics
compute_bmr | Compute Basal Metabolic Rate (BMR)
compute_intensity_distri_metrics | Compute intensity distribution metrics
compute_mets | Compute metabolic equivalent of task (MET) values
compute_mx | Compute MX metric
compute_peak_step_acc | Compute mean step accumulation (per min) from a given number of the best continous or discontinuous minutes
compute_pro_actigraph_score | Compute PROactive monitor-based physical activity score for C-PPAC tool
compute_pro_score_cppac | Provide score for each question of the C-PPAC
compute_pro_score_dppac | Provide score for each question of the D-PPAC
create_fig_mvpa | Create a figure showing the mean daily MVPA time
create_fig_mx_by_day | Create a radar plot for MX metrics relating to each day of the measurement of physical behavior
create_fig_mx_summary | Create a radar plot for the mean or median MX metrics relating to the measurement of physical behavior
create_fig_pal | Create a figure showing the mean daily Physical Activity Level (PAL)
create_fig_ratio_mvpa_sed | Create a figure showing the mean daily MVPA/SED ratio
create_fig_res_by_day | Create a figure with metrics shown for each day
create_fig_sed | Create a figure showing the mean daily sedentary (SED) time
create_fig_steps | Create a figure showing the mean daily step count
create_flextable_summary | Create a formatted table of results
do_all_analyses | Do all analyses at once
get_guidelines_status | Get WHO physical activity guidelines status
get_ig_results | Get intensity gradient values and graphics
get_pal_status | Get FAO physical activity level (PAL) status (http://www.fao.org/3/y5686e/y5686e07.htm#bm07.3)
get_pa_period_info | Get relevant missing physical activity information indicated by the user of the app
get_ratio_mvpa_sed_comment | Get comment about the MVPA/SED ratio
mark_intensity | Add intensity metrics
mark_wear_time | Mark dataset for nonwear/wear time
plot_data | Plot accelerometer data for each day
plot_data_with_intensity | Plot accelerometer data for each day with both nonwear time and physical activity intensity categories
prepare_dataset | Prepare accelerometer data
rasch_transform | Compute Rasch transformation for PROactive scores
read_agd | Read activity counts from an *.agd file
read_agd_raw | Read an *.agd file, with no post-processing
recap_by_day | Summarize results by day
run_app | Run the Shiny Application