# Spatially Explicit Population Models of Disease Transmission in Wildlife

## Documentation for package ‘epizootic’ version 2.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

aspatial_siri | Helper Function for Seasonal SIRI Simulation
bsl_raster | Raster of breeding season length for the house finch
check_aspatial_siri_inputs | Helper function to check the validity of inputs to the 'siri_model_summer' and 'siri_model_winter' functions.
check_simulator_inputs | Helper function to check the validity of inputs to the 'disease_simulator' function.
DiseaseModel | R6 class representing a disease model of the _Mycoplasma gallisepticum_ outbreak in _Haemorhous mexicanus_
disease_dispersal | Nested functions for population dispersal in a disease ecology simulation.
disease_results | Nested functions for initializing, calculating and collecting disease simulator results.
disease_simulator | Stage-based seasonal spatially explicit population-level disease model.
disease_transformation | Nested functions for a user-defined transformation of a population affected by a disease outbreak.
disease_transitions | Nested functions for stage- and compartment-based population transitions in an outbreak.
finch_region | Study region for house finch conjunctivitis simulations
habitat_suitability | House finch habitat suitability
initial_abundance | Initial house finch abundance
siri_model_summer | Simulate a _Mycoplasma gallisepticum_ Outbreak in the Breeding Season
siri_model_winter | Simulate a _Mycoplasma gallisepticum_ Outbreak in the Non-Breeding Season