Package: maldipickr
Title: Dereplicate and Cherry-Pick Mass Spectrometry Spectra
Version: 1.3.1
Authors@R: c(
    person("Charlie", "Pauvert", , "cpauvert@ukaachen.de", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0001-9832-2507")),
    person("David", "Wylensek", role = "ctb",
           comment = c(ORCID = "0000-0002-8424-5712")),
    person("Selina", "Nüchtern", role = "ctb"),
    person("Thomas", "Clavel", role = c("ctb", "fnd", "cph"),
           comment = c(ORCID = "0000-0002-7229-5595"))
  )
Description: Convenient wrapper functions for the analysis of
    matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF)
    spectra data in order to select only representative spectra (also
    called cherry-pick). The package covers the preprocessing and
    dereplication steps (based on Strejcek, Smrhova, Junkova and Uhlik
    (2018) <doi:10.3389/fmicb.2018.01294>) needed to cluster MALDI-TOF
    spectra before the final cherry-picking step. It enables the easy
    exclusion of spectra and/or clusters to accommodate complex
    cherry-picking strategies. Alternatively, cherry-picking using
    taxonomic identification MALDI-TOF data is made easy with functions to
    import inconsistently formatted reports.
License: GPL (>= 3)
URL: https://github.com/ClavelLab/maldipickr,
        https://clavellab.github.io/maldipickr/
BugReports: https://github.com/ClavelLab/maldipickr/issues
Depends: R (>= 3.2.0)
Imports: dplyr, lifecycle, magrittr, MALDIquant, readBrukerFlexData,
        rlang, stats, tibble, tidyr, tidyselect, tools, utils
Suggests: coop, knitr, rmarkdown, spelling, testthat
VignetteBuilder: knitr
Config/fusen/version: 0.5.2
Encoding: UTF-8
Language: en-US
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2024-09-12 19:37:15 UTC; cpauvert
Author: Charlie Pauvert [aut, cre, cph]
    (<https://orcid.org/0000-0001-9832-2507>),
  David Wylensek [ctb] (<https://orcid.org/0000-0002-8424-5712>),
  Selina Nüchtern [ctb],
  Thomas Clavel [ctb, fnd, cph] (<https://orcid.org/0000-0002-7229-5595>)
Maintainer: Charlie Pauvert <cpauvert@ukaachen.de>
Repository: CRAN
Date/Publication: 2024-09-12 20:00:02 UTC
Built: R 4.6.0; ; 2025-07-18 08:15:31 UTC; unix
