Package: omicwas
Type: Package
Title: Cell-Type-Specific Association Testing in Bulk Omics Experiments
Version: 0.8.0
Authors@R: person("Fumihiko", "Takeuchi", role = c("aut", "cre"),
                  email = "fumihiko@takeuchi.name",
                  comment = c(ORCID = "0000-0003-3185-5661"))
Description: In bulk epigenome/transcriptome experiments, molecular expression
    is measured in a tissue, which is a mixture of multiple types of cells.
    This package tests association of a disease/phenotype with a molecular marker
    for each cell type.
    The proportion of cell types in each sample needs to be given as input.
    The package is applicable to epigenome-wide association study (EWAS) and
    differential gene expression analysis.
    Takeuchi and Kato (submitted)
    "omicwas: cell-type-specific epigenome-wide and transcriptome association study".
URL: https://github.com/fumi-github/omicwas
BugReports: https://github.com/fumi-github/omicwas/issues
Depends: R (>= 3.6.0)
biocViews:
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: broom, data.table, dplyr, ff, glmnet, magrittr, MASS,
        matrixStats, parallel, purrr, rlang, tidyr
RoxygenNote: 7.1.1
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2020-10-08 09:40:09 UTC; fumi
Author: Fumihiko Takeuchi [aut, cre] (<https://orcid.org/0000-0003-3185-5661>)
Maintainer: Fumihiko Takeuchi <fumihiko@takeuchi.name>
Repository: CRAN
Date/Publication: 2020-10-08 12:50:03 UTC
Built: R 4.6.0; ; 2025-07-18 08:24:23 UTC; unix
