# Deconvolute Mixed Genomes with Unknown Proportions

## Documentation for package ‘DEploid’ version 0.5.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

computeObsWSAF | Compute observed WSAF
dEploid | Deconvolute mixed haplotypes
extractCoverageFromTxt | Extract read counts from plain text file
extractCoverageFromVcf | Extract read counts from VCF
extractPLAF | Extract PLAF
extractVcf | Extract VCF information
haplotypePainter | Painting haplotype according the reference panel
histWSAF | WSAF histogram
plotAltVsRef | Plot coverage
plotAltVsRefPlotly | Plot coverage
plotHistWSAFPlotly | WSAF histogram
plotObsExpWSAF | Plot WSAF
plotObsExpWSAFPlotly | Plot WSAF
plotProportions | Plot proportions
plotWSAFvsPLAF | Plot WSAF vs PLAF
plotWSAFVsPLAFPlotly | Plot WSAF vs PLAF