Package: Ravages
Type: Package
Title: Rare Variant Analysis and Genetic Simulations
Version: 1.2.0
Date: 2026-02-27
Encoding: UTF-8
Authors@R: c(person(given = "Ozvan",
                        family = "Bocher",
                        role = c("aut", "cre"),
                        email = "ozvan.bocher@univ-brest.fr"),
                 person(given = "Hervé",
                        family = "Perdry",
                        role = "aut"),
                 person(given = "Gaelle",
                        family = "Marenne",
                        role = "aut"))
Description: Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>) in the whole genome using the RAVA-FIRST approach (Bocher et al. 2022 <doi:10.1371/journal.pgen.1009923>). Ravages also enables to perform genetic simulations (Bocher et al. 2023 <doi:10.1002/gepi.22529>).
License: GPL-3
LinkingTo: Rcpp, RcppParallel, RcppEigen, gaston, BH
Depends: R (>= 3.5.0), Rcpp, RcppParallel, methods, gaston, mlogit (>=
        1.1-0)
Imports: Formula, dfidx, parallel, bedr, curl, data.table
NeedsCompilation: yes
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
LazyLoad: yes
LazyData: yes
LazyDataCompression: xz
Packaged: 2026-02-27 14:21:22 UTC; obocher
Author: Ozvan Bocher [aut, cre],
  Hervé Perdry [aut],
  Gaelle Marenne [aut]
Maintainer: Ozvan Bocher <ozvan.bocher@univ-brest.fr>
Repository: CRAN
Date/Publication: 2026-02-27 15:42:16 UTC
Built: R 4.4.3; x86_64-apple-darwin20; 2026-03-01 08:57:24 UTC; unix
Archs: Ravages.so.dSYM
