addChromosomeLines	ctl-internal
ath.churchill	ath.churchill
ath.gary	ath.churchill
ath.metab	ath.metabolites
ath.metabolites	ath.metabolites
ath.result	ath.result
a_loc	ctl-internal
basic.qc	basic.qc
check.genotypes	ctl-internal
check.marker	ctl-internal
check.pheno	ctl-internal
chiSQN	ctl-internal
chiSQtoP	ctl-internal
chr_length	ctl-internal
chr_total_length	ctl-internal
circle.loc	ctl-internal
correlated.phenotype	ctl-internal
correlation	ctl-internal
create.marker	ctl-internal
CTL	ctl-package
ctl	ctl-package
ctl.circle	ctl.circle
ctl.ctlmatrix	ctl.helper
ctl.dcormatrix	ctl.helper
ctl.lineplot	ctl.lineplot
ctl.load	ctl.load
ctl.name	ctl.helper
ctl.names	ctl.helper
ctl.qtlmatrix	ctl.helper
ctl.qtlprofile	ctl.helper
ctl.version	ctl-internal
CTLanalyseEffects	ctl-internal
CTLanalyseRatios	ctl-internal
CTLasLOD	ctl-internal
ctleffects	ctl-internal
CTLmapping	ctl.mapping
ctlmarker	ctl-internal
CTLnetwork	ctl.network
CTLnetwork.addmarker	ctl-internal
CTLpowerAnalysis	ctl-internal
CTLprofiles	ctl.profiles
CTLregions	ctl.regions
CTLscan	ctl.scan
CTLscan.cross	ctl.scan.cross
CTLscantoScanone	ctl-internal
CTLsignificant	ctl.significant
CTLtoLODvector	ctl-internal
dcor	ctl-internal
dcor.create	ctl-internal
deltaSD	ctl-internal
detect.peaks	detect.peaks
draw.element	ctl-internal
draw.spline	ctl-internal
dw	ctl-internal
extrapolateBeyondRange	ctl-internal
gcLoop	ctl-internal
get.chr.edges	ctl-internal
getCorrelations	ctl-internal
getCorrelations.cross	ctl-internal
getPermuteThresholds	ctl-internal
getRatio	ctl-internal
getRVM	ctl-internal
hist.CTLobject	ctl.hist
image.CTLobject	ctl.image
internal.image	ctl-internal
lodscorestoscanone	ctl-internal
mapinfotomarkerlocs	ctl-internal
munique	ctl-internal
m_loc	ctl-internal
nfrom	ctl-internal
nto	ctl-internal
openmp	ctl-internal
plot.CTLnetwork	ctl-internal
plot.CTLobject	ctl.plot.ctlobject
plot.CTLpermute	ctl.permute.plot
plot.CTLscan	ctl.plot.ctlscan
plot.CTLscan2	ctl-internal
plotCTLscan3	ctl-internal
plotExpression	ctl-internal
plotTraits	plotTraits
print.CTLobject	ctl.print.ctlobject
print.CTLpermute	ctl-internal
print.CTLscan	ctl.print.ctlscan
printSignificantSlope	ctl-internal
qtlimage	qtl.image
QTLmapping	qtl.mapping
redblue	ctl-internal
remove.diag	ctl-internal
scanSD	scanSD
scanSD.cross	scanSD.cross
scanSlopes	scanSlopes
scanSlopes.cross	scanSlopes.cross
stdSlopeBeta	ctl-internal
stdSlopeError	ctl-internal
stdSlopeEstimate	ctl-internal
stdSlopeIntercept	ctl-internal
stdSlopeTest	ctl-internal
test.chiSQN	ctl-internal
test.correlation	ctl-internal
test.getCorrelation.cross	ctl-internal
test.power.test	ctl-internal
top.correlated	ctl-internal
up	ctl-internal
whiteblack	ctl-internal
yeast.brem	yeast.brem
