Package: pctax
Type: Package
Title: Professional Comprehensive Omics Data Analysis
Version: 0.1.3
Authors@R: person("Chen", "Peng", email ="pengchen2001@zju.edu.cn", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9449-7606"))
Description: Provides a comprehensive suite of tools for analyzing omics data. It includes functionalities for alpha diversity analysis, beta
                diversity analysis, differential abundance analysis, community assembly analysis, visualization of phylogenetic tree, and
                functional enrichment analysis. With a progressive approach, the package offers a range of analysis methods to explore and
                understand the complex communities. It is designed to support researchers and practitioners in conducting in-depth and
                professional omics data analysis.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.3
Depends: R (>= 4.2.0)
LazyData: true
Imports: pcutils (>= 0.2.5), dplyr, ggplot2 (>= 3.2.0), vegan,
        magrittr, grDevices, RColorBrewer, ggrepel, reshape2, stats,
        tibble, utils, ggpubr, ggnewscale, ade4, scales
Suggests: picante, httr, NST, permute, aplot, pheatmap, MASS, Rtsne,
        mixOmics, geosphere, phyloseq, phyloseqGraphTest, plotly, umap,
        Hmisc, minpack.lm, bbmle, snow, foreach, doSNOW, patchwork,
        tidytree, ggtree, ggtreeExtra, vctrs, zoo, ape, DESeq2, limma,
        ALDEx2, Mfuzz, edgeR, methods, randomForest, knitr, rmarkdown,
        MetaNet, showtext, jsonlite, prettydoc, readxl, clipr, zetadiv,
        ggforce
VignetteBuilder: knitr
BugReports: https://github.com/Asa12138/pctax/issues
URL: https://github.com/Asa12138/pctax
ByteCompile: true
biocViews: Microbiome, Software, Visualization
NeedsCompilation: no
Packaged: 2024-12-02 09:39:58 UTC; asa
Author: Chen Peng [aut, cre] (<https://orcid.org/0000-0002-9449-7606>)
Maintainer: Chen Peng <pengchen2001@zju.edu.cn>
Repository: CRAN
Date/Publication: 2024-12-02 10:00:02 UTC
Built: R 4.6.0; ; 2025-08-20 16:16:45 UTC; unix
