# Fields in ridigbio

There are many fields that can be obtained via the Search and Media API. This tutorial is meant to aid in identifying these fields.

## General Overview

In this demo we will cover how to:

1. Identifying both raw and indexed record fields with `idig_meta_fields()`
2. Downloading fields of interest with `idig_search_records()`
3. Identifying both raw and indexed media record fields with `idig_meta_fields()`
4. Downloading fields of interest with `idig_search_media()`

## Search API Fields

To identify the raw, or verbatim, fields available with the Search API, you can run the following:

    record_fields <- idig_meta_fields(type = "records", subset = "raw")
    rfall <- data.frame(matrix(ncol = 2, nrow = 0))
    colnames(rfall) <- c("Type", "FieldNameValue")

    for(i in 1:length(record_fields)) {
        rf <- data.frame(
            Type = record_fields[[i]]$type,
            FieldNameValue = record_fields[[i]]$fieldName,
            stringsAsFactors = FALSE
        )
        rfall <- rbind(rfall, rf)
    }
    colnames(rfall) <- c("type", "fieldName")
    nrow(rfall)

    ## [1] 219

In addition to the fields provided by data providers, the Search API contains fields that have been indexed and potentially modified by iDigBio. To identify the indexed fields available with the Search API, you can run the following:

    record_fields_index <- idig_meta_fields(type = "records", subset = "indexed")
    rfalli <- data.frame(matrix(ncol = 2, nrow = 0))
    colnames(rfalli) <- c("Type", "FieldNameValue")

    for(i in 1:length(record_fields_index)) {
        rf <- data.frame(
            Type = record_fields_index[[i]]$type,
            FieldNameValue = record_fields_index[[i]]$fieldName,
            stringsAsFactors = FALSE
        )
        rfalli <- rbind(rfalli, rf)
    }
    colnames(rfalli) <- c("type", "fieldName")
    nrow(rfalli)

    ## [1] 82

Note, these fields lists are different.

    setequal(rfall, rfalli)

    ## [1] FALSE

However, they contain similar information. For example, scientificName can be found in both the raw and index fields.

    rfall[171,]

    ##       type               fieldName
    ## 171 string data.dwc:scientificName

    rfalli[69,]

    ##      type      fieldName
    ## 69 string scientificname

### Retain records with these fields

To obtain records with these fields with the `idig_search_records()` function, you simply list the `fields` arugument as equal to these fields.

    out <- idig_search_records(rq=list(scientificname="Galax urceolata"),
                               fields = rfall$fieldName)

## Media Record API Fields

To identify the raw, or verbatim, fields available with the Media Record API, you can run the following:

    media_fields <- idig_meta_fields(type = "media", subset = "raw")
    mfall <- data.frame(matrix(ncol = 2, nrow = 0))
    colnames(mfall) <- c("Type", "FieldNameValue")

    for(i in 1:length(media_fields)) {
        mf <- data.frame(
            Type = media_fields[[i]]$type,
            FieldNameValue = media_fields[[i]]$fieldName,
            stringsAsFactors = FALSE
        )
        mfall <- rbind(mfall, mf)
    }
    colnames(mfall) <- c("type", "fieldName")
    nrow(mfall)

    ## [1] 139

Like the Search API, the Media Record API has fields that have been indexed and potentially modified by iDigBio. To identify the indexed fields available with the Media Record API, you can run the following:

    media_fields_indexed <- idig_meta_fields(type = "media", subset = "indexed")
    mfalli <- data.frame(matrix(ncol = 2, nrow = 0))
    colnames(mfalli) <- c("Type", "FieldNameValue")

    for(i in 1:length(media_fields_indexed)) {
        mf <- data.frame(
            Type = media_fields_indexed[[i]]$type,
            FieldNameValue = media_fields_indexed[[i]]$fieldName,
            stringsAsFactors = FALSE
        )
        mfalli <- rbind(mfalli, mf)
    }
    colnames(mfalli) <- c("type", "fieldName")
    nrow(mfalli)

    ## [1] 21

Note, all index fields associated with the Media Record API are returned by default with the `idig_search_media()` function.

    mfalli$fieldName

    ##  [1] "accessuri"      "datemodified"   "dqs"            "etag"
    ##  [5] "flags"          "format"         "hasSpecimen"    "licenselogourl"
    ##  [9] "mediatype"      "modified"       "recordids"      "records"
    ## [13] "recordset"      "rights"         "tag"            "type"
    ## [17] "uuid"           "version"        "webstatement"   "xpixels"
    ## [21] "ypixels"

### Retain records with these fields

To obtain records with these fields with the `idig_search_media()` function, you simply list the `fields` argument as equal to these fields.

    out <- idig_search_media(rq=list(scientificname="Galax urceolata"), fields = mfalli$fieldName)

    out %>%
    kable() %>%
    kable_styling(bootstrap_options = c("striped", "hover", "condensed"),
                    font_size = 12,
                    fixed_thead = T) %>%
      scroll_box(width = "100%", height = "400px")

accessuri | datemodified | dqs | etag | flags | format | hasSpecimen | licenselogourl | mediatype | modified | recordids | records | recordset | rights | tag | type | uuid | version | webstatement | xpixels | ypixels
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
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