.cctm                   Create a 'conditional' ctm model with random
                        effects as offsets
.idx                    Get parameter indices of various structures
.parallel_default       Boilerplate parallel-handling function,
                        modified from 'glmmTMB'
BoxCoxME                Mixed-effects version of 'BoxCox'
ColrME                  Mixed-effects version of 'Colr'
CoxphME                 Mixed-effects version of 'Coxph'
LehmannME               Mixed-effects version of 'Lehmann'
LmME                    Mixed-effects version of 'Lm'
PolrME                  Mixed-effects version of 'Polr'
SurvregME               Mixed-effects version of 'Survreg'
VarCorr.LmME            Variances and correlation matrices of random
                        effects of an LmME object
VarCorr.tramME          Variances and correlation matrices of random
                        effects
anova.tramME            Comparison of nested tramME models.
coef.LmME               Extract the coefficients of the fixed effects
                        terms of an LmME model.
coef.SurvregME          Extract the coefficients of the fixed effects
                        terms of an SurvregME model.
coef.tramME             Extract the coefficients of the fixed effects
                        terms.
coef<-.tramME           Set coefficients of a tramME model.
confint.LmME            Confidence intervals for LmME model parameters
confint.tramME          Confidence intervals for tramME model
                        parameters
duplicate               Generic for copying objects that are (partly)
                        modified in place
duplicate.tramTMB       Create a duplicate of the tramTMB object
edf_smooth              Calculate edf for smooth terms
edf_smooth.tramME       EDFs of smooth shift terms
fitmod                  Fit the model.
fitmod.tramME           Call the optimizer on a tramME object
is.pd                   Check positive definiteness
logLik.tramME           Get the log-likelihood of the tramME model
model.frame.tramME      Extract model frame from a tramME model
model.matrix.tramME     Model matrices for 'tramME' models
offset                  Generic method for '"offset"'
offset.default          Default method for '"offset"'
offset.tramME           Get the offset vector of a tramME object.
offset<-                Generic method for '"offset<-"'
offset<-.tramME         Set the values of the offsets of a tramME
                        model.
optim_control           Set up and control optimization parameters
optim_tramTMB           Optimize the tramTMB object
plot.smooth.tramME      Plot smooth terms of a tramME model.
plot.tramME             Plotting method for tramME objects
predict.tramME          Predict method for tramME objects
predict.tramTMB         Post-estimation calculations in a tramTMB model
print.VarCorr.tramME    Print method for the variance-correlation
                        parameters of a tramME object
print.anova.tramME      Printing 'anova.tramME' table
print.summary.tramME    Print method for tramME model summary
print.tramME            Print tramME model
ranef.LmME              Extract the conditional modes of random effects
                        of an LmME model
ranef.tramME            Point estimates and conditional variances of
                        random effects.
residuals.LmME          Residuals of a LmME model
residuals.tramME        Residuals of a tramME model
sigma.LmME              Extract the SD of the error term of an LmME
                        model.
smooth_terms            Get smooth terms.
smooth_terms.LmME       Evaluate smooth terms of a 'LmME' model.
smooth_terms.tramME     Extract and evaluate the smooth terms of a
                        tramME model
summary.tramME          Summary method for tramME model
tramME                  General function to define and fit tramME
                        models
tramME_model            Create an object that defines a tramME_model
tramTMB                 Create a tramTMB object
varcov                  Generic method for 'varcov'
varcov.LmME             Extract the variance-covariance matrix of the
                        random effects of an LmME model
varcov.tramME           Extract the variance-covariance matrix of the
                        random effects
varcov<-                Generic method for '"varcov<-"'
varcov<-.tramME         Set the values of the random effects covariance
                        matrices of a tramME model.
variable.names.tramME   Return variable names.
vcov.LmME               Get the variance-covariance matrix of the
                        parameters of an LmME model
vcov.tramME             Calculate the variance-covariance matrix of the
                        parameters
vcov.tramTMB            Variance-covariance matrix of the parameters
weights.tramME          Get the observation weight vector of a tramME
                        object.
weights<-               Generic method for '"weights<-"'
weights<-.tramME        Set the values of the observation weights of a
                        tramME model.
