'Galaxy' API Implementation
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Documentation for package ‘GalaxyR’ version 0.1.1
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| galaxy | Create a Galaxy session object |
| Galaxy-class | Galaxy session object |
| galaxy_delete_dataset | Delete a Galaxy dataset by ID |
| galaxy_delete_datasets | Delete multiple Galaxy datasets by ID |
| galaxy_download_result | Generic for downloading files from a history |
| galaxy_download_result-method | Generic for downloading files from a history |
| galaxy_download_rocrate | Generic for downloading a history as an RO-Crate |
| galaxy_download_rocrate-method | Generic for downloading a history as an RO-Crate |
| galaxy_get_file_info | Get information for one or more Galaxy datasets |
| galaxy_get_tool | Retrieve detailed metadata for a Galaxy tool |
| galaxy_get_tool_id | Retrieve Galaxy tool IDs by name |
| galaxy_get_workflow | Receive workflow metadata from the API |
| galaxy_get_workflow_inputs | Retrieve input definitions for a Galaxy workflow |
| galaxy_has_key | Check whether a Galaxy API key is available |
| galaxy_history_size | Galaxy history size Get the disk usage / size of a Galaxy history |
| galaxy_initialize | Create a new Galaxy history |
| galaxy_initialize-method | Create a new Galaxy history |
| galaxy_list_histories | List Galaxy histories (name and history id) |
| galaxy_list_invocations | List workflow invocations for a given workflow |
| galaxy_list_tools | List tools installed on a Galaxy instance |
| galaxy_list_workflows | List workflows available to the user |
| galaxy_poll_tool | Generic for galaxy_poll_tool |
| galaxy_poll_tool-method | Generic for galaxy_poll_tool |
| galaxy_poll_workflow | Generic for polling workflows |
| galaxy_poll_workflow-method | Generic for polling workflows |
| galaxy_run_tool | Generic run tool |
| galaxy_run_tool-method | Generic run tool |
| galaxy_set_credentials | Set Galaxy connection parameters for the current R session |
| galaxy_start_workflow | Generic start workflow |
| galaxy_start_workflow-method | Generic start workflow |
| galaxy_upload_ftp | Generic upload ftp |
| galaxy_upload_ftp-method | Generic upload ftp |
| galaxy_upload_https | Generic upload file with https |
| galaxy_upload_https-method | Generic upload file with https |