Computation of 3D Tree Imbalance

[Up] [Top]

Documentation for package ‘treeDbalance’ version 1.2.0

Help Pages

addImbalPhylo3D Plot a phylo3D object
addPhylo3D Plot a phylo3D object
addSketchPhylo3D Sketch a phylo3D object
all3DImbalIndices Calculation of integral-based distance- and angle-based 3D imbalance indices
alpha_Index Calculation of integral-based distance- and angle-based 3D imbalance indices
angle3dVec Calculation of the centroid angles
A_Index Calculation of integral-based distance- and angle-based 3D imbalance indices
combined3DIndex Calculation of combined 3D imbalance indices
cross3d_prod Calculation of the centroid distances
dist3dToLine Calculation of the centroid distances
enum2cladewise Change the node enumeration of trees in phylo(3D) format
enum2depthwise Change the node enumeration of trees in phylo(3D) format
enum2_1toV Change the node enumeration of trees in phylo(3D) format
example3Dtrees Examples of rooted 3D trees
extendPhylo Useful extensions to the phylo format
extractTopology Extract the non-3D topology of trees in phylo(3D) format
getAncs Useful extensions to the phylo format
getChildren Useful extensions to the phylo format
getDescendants Useful extensions to the phylo format
getDescs Useful extensions to the phylo format
getDistFromLeaf Useful extensions to the phylo format
getDistFromRoot Useful extensions to the phylo format
getIncEdgeLens Useful extensions to the phylo format
getIncEdgeWeights Useful extensions to the phylo format
getLeaves Useful extensions to the phylo format
getNodeDepths Useful extensions to the phylo format
getNodesAtDepth Useful extensions to the phylo format
getSubtrCentr Useful extensions to the phylo format
imbalInt_e Calculation of integral-based distance- and angle-based 3D imbalance indices
imbalProfile Calculation of 3D imbalance profiles
imbalProfile_e Calculation of integral-based distance- and angle-based 3D imbalance indices
imbalSubdiv_A Calculation of the centroid angles
imbalSubdiv_alpha Calculation of the centroid angles
imbalSubdiv_M Calculation of the centroid distances
imbalSubdiv_mu Calculation of the centroid distances
makePhylo3DBalanced Turn a rooted 3D tree into one of its balanced versions
mu_Index Calculation of integral-based distance- and angle-based 3D imbalance indices
M_Index Calculation of integral-based distance- and angle-based 3D imbalance indices
plot.phylo3D Print, summary and plot methods for phylo3D objects
plotImbalPhylo3D Plot a phylo3D object
plotPhylo3D Plot a phylo3D object
print.phylo3D Print, summary and plot methods for phylo3D objects
qsm2phylo3D Convert QSM format to a phylo3D object
qsmList2phylo3D Convert QSM format to a phylo3D object
rotate3dVec Turn a rooted 3D tree into one of its balanced versions
sketchPhylo3D Sketch a phylo3D object
summary.phylo3D Print, summary and plot methods for phylo3D objects