Drugs Databases Parser

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Documentation for package ‘dbparser’ version 2.3.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

add_database_info	add_database_info Assign passed databases db metadata to passed dvobject
cett_nodes_options	returns carriers, enzymes,targets and transporters node valid options.
drug_node_options	returns drug node valid options.
get_genes_for_phenotype	Get Genes Associated with a Phenotype
get_source_metadata	Get the source metadata of a dvobject
merge_drugbank_hpo	Merge DrugBank and HPO Gene-Phenotype Database Objects
merge_drugbank_onsides	Merge DrugBank and OnSIDES Database Objects
merge_drugbank_twosides	Merge a DrugBank dvobject with a TWOSIDES dvobject
parseDrugBank	parseDrugBank
parseHealthCanadaDPD	Parse the Health Canada Drug Product Database (DPD) Data Extract
parseHGNC	Parse the HGNC Gene Nomenclature Files
parseHPO	Parse HPO Gene-Phenotype Associations
parseOnSIDES	Parse the OnSIDES Core Relational Database
parseOpenFDA	Parse the openFDA Drugs@FDA and NDC Directory Downloads
parseTWOSIDES	Parse the TWOSIDES Drug-Drug Interaction Database
references_node_options	returns references node valid options.
search_phenotypes	Search HPO Phenotypes by Keyword
show_dvobject_metadata	Display dvobject Metadata
subset_drugbank_dvobject	Subset a DrugBank dvobject by a vector of DrugBank IDs
subset_onsides_dvobject	Subset an OnSIDES dvobject by a vector of RxNorm Ingredient IDs (Schema-Aware)