CheckDiemFormat         diem input file checker
ModelOfDiagnostic       Model of Diagnostic Marker Based on All
                        Individual State Counts
brenthis                Dataset of Butterfly Genotypes
diem                    Diagnostic Index Expectation Maximisation
emPolarise              Polarises a marker
hybridIndex             Compute hybrid index from genotypes, files, or
                        numeric values
importPolarized         Imports genomic data polarized according to the
                        specification
myotis                  Dataset of Modified Genotypes of Bats
pHetErrOnStateCount     Hybrid index, heterozygosity, error rate
plotDeFinetti           Plot the De Finetti Diagram for Polarized
                        Genotypes
plotMarkerAxis          Add a Marker Axis with Chromosome Names to a
                        Plot of Polarized Genotypes
plotPolarized           Plot Polarized Genotypes
rank2map                Convert SNP Ranks To Windows Corresponding to
                        Mapping Distance
readIncludedSites       Read genomic sites from a BED-like file
sStateCount             Count states in a vector
smoothPolarizedGenotypes
                        Smooth Polarized Genotype States
testdata                Dataset of Fish Genotypes
variantSites            Identify Variant Sites in Genotype Files
vcf2diem                Convert vcf files to diem format
