# Generated by roxygen2: do not edit by hand

export(CheckDiemFormat)
export(diem)
export(emPolarise)
export(hybridIndex)
export(importPolarized)
export(pHetErrOnStateCount)
export(plotDeFinetti)
export(plotMarkerAxis)
export(plotPolarized)
export(rank2map)
export(readIncludedSites)
export(sStateCount)
export(smoothPolarizedGenotypes)
export(variantSites)
export(vcf2diem)
import(circlize)
importFrom(data.table,fread)
importFrom(grDevices,col2rgb)
importFrom(grDevices,dev.cur)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,axis)
importFrom(graphics,box)
importFrom(graphics,image)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,points)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(parallel,detectCores)
importFrom(parallel,mclapply)
importFrom(stats,aggregate)
importFrom(stats,na.pass)
importFrom(stats,setNames)
importFrom(tools,file_ext)
importFrom(tools,file_path_sans_ext)
importFrom(utils,capture.output)
importFrom(utils,flush.console)
importFrom(utils,head)
importFrom(utils,modifyList)
importFrom(utils,read.table)
importFrom(utils,write.table)
importFrom(vcfR,extract.gt)
importFrom(vcfR,getFIX)
importFrom(zoo,rollmean)
