* using log directory 'd:/Rcompile/CRANpkg/local/4.7/searchAnalyzeR.Rcheck'
* using R Under development (unstable) (2026-05-09 r90031 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-05-10 18:31:12 UTC
* checking for file 'searchAnalyzeR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'searchAnalyzeR' version '0.1.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'searchAnalyzeR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s] OK
* checking Rd files ... [2s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [7s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [15s] OK
  Running 'testthat.R' [15s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [9s] ERROR
Error(s) in re-building vignettes:
--- re-building 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' using rmarkdown

Quitting from Comparing_Search_Strategies_with_searchAnalyzeR.Rmd:130-150 [execute_searches]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `ans[[1]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. └─searchAnalyzeR::search_pubmed(...)
 2.   └─rentrez::entrez_search(...)
 3.     ├─rentrez:::parse_esearch(parsed, history = use_history)
 4.     └─rentrez:::parse_esearch.XMLInternalDocument(parsed, history = use_history)
 5.       ├─XML::xmlValue(x[["/eSearchResult/Count"]])
 6.       ├─x[["/eSearchResult/Count"]]
 7.       └─XML:::`[[.XMLInternalDocument`(x, "/eSearchResult/Count")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd'

--- re-building 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' using rmarkdown

Quitting from Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd:106-117 [execute-search]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `ans[[1]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. └─searchAnalyzeR::search_pubmed(...)
 2.   └─rentrez::entrez_search(...)
 3.     ├─rentrez:::parse_esearch(parsed, history = use_history)
 4.     └─rentrez:::parse_esearch.XMLInternalDocument(parsed, history = use_history)
 5.       ├─XML::xmlValue(x[["/eSearchResult/Count"]])
 6.       ├─x[["/eSearchResult/Count"]]
 7.       └─XML:::`[[.XMLInternalDocument`(x, "/eSearchResult/Count")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd'

SUMMARY: processing the following files failed:
  'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd'
  'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [23s] OK
* checking HTML version of manual ... [19s] OK
* DONE
Status: 1 ERROR