# Simulation of Chromosomal Regions Shared by Family Members

## Documentation for package ‘ibdsim2’ version 2.3.2

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

convertPos | Conversion of genetic map positions
customMap | Custom recombination map
estimateCoeffs | Estimation of one- and two-locus relatedness coefficients
estimateIdentity | Estimation of one- and two-locus relatedness coefficients
estimateInbreeding | Estimation of one- and two-locus relatedness coefficients
estimateKappa | Estimation of one- and two-locus relatedness coefficients
estimateKinship | Estimation of one- and two-locus relatedness coefficients
estimateTwoLocusIdentity | Estimation of one- and two-locus relatedness coefficients
estimateTwoLocusInbreeding | Estimation of one- and two-locus relatedness coefficients
estimateTwoLocusKappa | Estimation of one- and two-locus relatedness coefficients
estimateTwoLocusKinship | Estimation of one- and two-locus relatedness coefficients
extractIds | Extract ID labels from simulation output
findPattern | Find specific IBD patterns
haploDraw | Draw haplotypes onto a pedigree plot
ibdsim | IBD simulation
karyoDiploid | Diploid karyogram
karyogram2 | Karyogram plots
karyoHaploid | Haploid karyogram
launchApp | Launch the ibdsim2 app
legacy_decode19 | Legacy version of the 'decode19' map
loadMap | Load a built-in genetic map
mapLen | Physical and genetic map lengths
mapLen.chromMap | Physical and genetic map lengths
mapLen.genomeMap | Physical and genetic map lengths
maplengths | Physical and genetic map lengths
physRange | Physical and genetic map lengths
physRange.chromMap | Physical and genetic map lengths
physRange.genomeMap | Physical and genetic map lengths
plotSegmentDistribution | Scatter plots of IBD segment distributions
profileSimIBD | Simulate markers conditional on a given IBD pattern
realised | Realised relatedness
realisedIdentity | Realised relatedness
realisedInbreeding | Realised relatedness
realisedKappa | Realised relatedness
realisedKinship | Realised relatedness
segmentStats | Summary statistics for identified segments
uniformMap | Uniform recombination maps
zeroIBD | Probability of zero IBD