Package: brainGraph
Type: Package
Version: 3.1.1
Date: 2025-10-15
Title: Graph Theory Analysis of Brain MRI Data
Authors@R: person(given="Christopher G.", family="Watson",
                  email="cgwatson@bu.edu", role=c("aut", "cre"),
                  comment=c(ORCID="0000-0002-7082-7631"))
Description: A set of tools for performing graph theory analysis of brain MRI
    data. It works with data from a Freesurfer analysis (cortical thickness,
    volumes, local gyrification index, surface area), diffusion tensor
    tractography data (e.g., from FSL) and resting-state fMRI data (e.g., from
    DPABI). It contains a graphical user interface for graph visualization and
    data exploration, along with several functions for generating useful
    figures.
URL: https://github.com/cwatson/brainGraph
BugReports: https://groups.google.com/forum/?hl=en#!forum/brainGraph-help
LazyData: true
Depends: R (>= 3.5.0), igraph (>= 1.2.4),
Imports: abind, data.table (>= 1.12.4), doParallel, foreach, grid,
        lattice, MASS, Matrix, methods, permute, parallel
Suggests: Hmisc, ade4, boot, car, expm, ggplot2, ggrepel, gridExtra,
        mediation, oro.nifti, scales
License: GPL-3
RoxygenNote: 7.3.3
Collate: 'glm_stats.R' 'brainGraph_GLM.R' 'glm_methods.R' 'NBS.R'
        'analysis_random_graphs.R' 'atlas.R' 'auc.R' 'boot_global.R'
        'brainGraph_mediate.R' 'centr_lev.R' 'communicability.R'
        'contract_brainGraph.R' 'corr_matrix.R' 'count_edges.R'
        'create_graphs.R' 'create_mats.R' 'data.R' 'data_tables.R'
        'distances.R' 'edge_asymmetry.R' 'get_resid.R' 'glm_design.R'
        'glm_fit.R' 'glm_randomise.R' 'graph_efficiency.R' 'hubs.R'
        'import.R' 'individ_contrib.R' 'list.R' 'method_helpers.R'
        'mtpc.R' 'methods.R' 'permute_group.R' 'plot_brainGraph.R'
        'plot_brainGraph_multi.R' 'plot_global.R' 'plot_group_means.R'
        'plot_rich_norm.R' 'plot_vertex_measures.R' 'random_graphs.R'
        'rich_club.R' 'robustness.R' 's_core.R'
        'set_brainGraph_attributes.R' 'small_world.R' 'spatial_dist.R'
        'utils.R' 'utils_matrix.R' 'vertex_roles.R' 'vulnerability.R'
        'write_brainnet.R' 'zzz.R'
NeedsCompilation: no
Packaged: 2025-10-16 05:08:26 UTC; cwatson
Author: Christopher G. Watson [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7082-7631>)
Maintainer: Christopher G. Watson <cgwatson@bu.edu>
Repository: CRAN
Date/Publication: 2025-10-16 05:50:02 UTC
Built: R 4.4.3; ; 2025-12-17 04:01:26 UTC; windows
