b3c2eb5d91cc41a8307189e5e79cde23 *DESCRIPTION
ab074b63ac261f17d3b7d1fa507ef527 *LICENSE
54ae34bc9130817f3e4c66a10c10354e *NAMESPACE
d46c745e6e36a8a7ceab3d7924c95f33 *NEWS.md
e86da0c907785616c245335d1b770c87 *R/0a_backbone.R
6374880134f46688108ebfc572d15d16 *R/0b_modnet_pieces.R
a99637826aa922a6b254f9635c1ee8b8 *R/0c_backbone_lego.R
b5f2607bd9836ee8486908c0334e48f9 *R/0d_backbones.R
8f3c7e6eb0a9f6974081a533a5e57bab *R/1_initialisation.R
7607b025e01cfa08d4848fd0c9df2ca0 *R/2_tf_network.R
cec7a128237f563828aaf0bc0ef68173 *R/3_feature_network.R
c97fa8a7cfc55f267fca5703dc73c97f *R/4_kinetics.R
437c25200d329b7764f066605af58831 *R/5_gold_standard.R
000264a047db034b09cee21abb5c86fa *R/6_simulation.R
ed6cef554387ee30b573ac5eece8b3aa *R/7_experiment.R
8b0d7cb9d9752c3b1180c7558ed4e22c *R/8_convert.R
6e22c7f981f94e80b488df99b24a422d *R/caching.R
c076918908bc00ba15fffe8ad354e221 *R/colour_brighten.R
c3df08a193e9e6988d31a6076b0dd8cc *R/combine_models.R
0fe4313e7bb76f8028fda04ccfb33ebf *R/data-example_model.R
e15bbfb93ac84bab784be6db4b772964 *R/data-realnet.R
792bc94b76ff64d148177c1c9d82131c *R/dimred.R
ccc70cf4ee8043a13607da41d3be795f *R/generate_dataset.R
8ec6be3f6945596f17a93749c83a7a47 *R/generate_partitions.R
2105e67ae41067885544453cd5d9799c *R/package.R
0b69e7ea702bbd1f45ccda05855c8686 *R/plotting.R
9eca79cd82b9e60029e077e7df589333 *R/random_generators.R
cadddf7ebfa877488e627c39e2795307 *R/reexports.R
0636f6b9a2e82e169d813323dbc1a3ad *R/simtime_from_backbone.R
b90dd27bef6a04827228ac68d330c1df *R/timings.R
a95e1c0fec9131907bf42abc53e42cbc *README.md
4f571d94821d1cd2fd4950dda6444de8 *build/vignette.rds
3d689d6e19c17b2569f01d554b5c7030 *data/example_model.rda
6ccb0ab640c17865997eff2c93bb22d8 *data/realcounts.rda
577838d68401ca076b3f6c8a877c8754 *data/realnets.rda
4918fd427dd5828a5a5f045ca0eba040 *inst/CITATION
161a4ed8eab4b792ceb7f6fff4a39853 *inst/doc/getting_started.html
7b1f5d1ef3f996bb3b77a1d8c3705439 *inst/doc/getting_started.html.asis
ebf63cf2baa805ef4a4cabcceb95f0ba *inst/doc/installation.html
c213465810c96cc80206e4f6d7701d2c *inst/doc/installation.html.asis
931563ff34ad1cc8ba85454f61a1883d *man/backbone.Rd
540317ffa9054870f1c8b5fb1495253c *man/backbone_models.Rd
60bb0850731b7a222f1459f0476db0fe *man/bblego.Rd
231eb475683efe8454706ca973a71d92 *man/combine_models.Rd
cef89a03fbb87aa6b449e32dcd09587e *man/convert.Rd
43e693bd753c5c5f85f9d134bfbed1fb *man/dyngen-package.Rd
733e7922b738e4995b6a58c969c8dfdd *man/example_model.Rd
93b3fb01daee21a88f980b3e38a1ae77 *man/figures/logo.png
f7b51aa62192fad804f97b59d2115beb *man/figures/overview.png
9c8e6d6c9d2c577e3bebf3755498e035 *man/generate_cells.Rd
7b46bf567ee43c3eb5019f3f8f2c5da8 *man/generate_dataset.Rd
3ecbe3df1f3a1efb0731901fd3056f31 *man/generate_experiment.Rd
36cec4886cc3dad96eedb724d1127bf4 *man/generate_feature_network.Rd
0b1d6d061efee59933f24e3f0b8b1413 *man/generate_gold_standard.Rd
b39e3e01a9dad09969328d99b68da91f *man/generate_kinetics.Rd
071afb5886cca3d3a5cf77c635b7ad1d *man/generate_tf_network.Rd
3a221052140edec9bbc0ca0ac130436c *man/get_timings.Rd
b31291cff0760142573f4cbcd45b95f2 *man/initialise_model.Rd
1c124ff83831adf37390c0fa118165c6 *man/kinetics_noise.Rd
92e966371a9059cb452c3d92facf97e2 *man/plot_backbone_modulenet.Rd
56d7293b237926674e08e2cddfb3335a *man/plot_backbone_statenet.Rd
3497b8c0147e5095418e7e21d9b05dc7 *man/plot_experiment_dimred.Rd
f07615e0c30f4d3e3a8eba48190fdcde *man/plot_feature_network.Rd
912e6f8f1a2dde2aa2297a99b7d86848 *man/plot_gold_expression.Rd
44f3e6dda50a62da7af971cb65b0bbb1 *man/plot_gold_mappings.Rd
64e28dcd288730ae84dd99b01f8bfd2b *man/plot_gold_simulations.Rd
b90ce35ad19a6a99e7769f953f9db7df *man/plot_simulation_expression.Rd
4de91d43c7ca826c4492196de7ccb4b9 *man/plot_simulations.Rd
f66b8d8694057b0a60bb3471ef0d1f06 *man/plot_summary.Rd
cd8d87806cb96cf56dc1537962d26c46 *man/realcounts.Rd
9e5765959277718ec29aba4ae845079a *man/realnets.Rd
1755b3cfd9f0bb317013fa253b19ae8b *man/reexports.Rd
ab58a0bb842111b125b50b0618be43f5 *man/rnorm_bounded.Rd
7dbb035de7c4dbfa57227dd3be386bb5 *man/runif_subrange.Rd
038cbc1bf94ed0adf5f1d5009676a5ac *man/simtime_from_backbone.Rd
b9df50aee34d461662e1b5d20dced7a7 *tests/testthat.R
281324d3bec98bda4b18777ce7c6de96 *tests/testthat/7_experiment.R
38e13326c12747d7707e28fe40938ff1 *tests/testthat/test-1_initialisation.R
4a37a6d4ab6222efb6a4f48aa5126f45 *tests/testthat/test-2_backbone.R
5dc5d7b157253e0f6ee76940b7509912 *tests/testthat/test-combine_models.R
d6494129103e25f056fcf29b00b3d9a8 *tests/testthat/test-generate_dataset.R
7c707f905528e896c5f2e82bcba2dd15 *tests/testthat/test-generate_partitions.R
7b1f5d1ef3f996bb3b77a1d8c3705439 *vignettes/getting_started.html.asis
c213465810c96cc80206e4f6d7701d2c *vignettes/installation.html.asis
