c1e25e191df8ff92a7ceb4c49cef019f *DESCRIPTION
2295c34ccb22da0ab3f74aecc19025c9 *NAMESPACE
000160cd8cff94d3d33bc377e18432e0 *NEWS
95c458eae527b8f6ef66cff079b0aff6 *R/data_checks.R
fd657f22621985b5b209d778910b0ff9 *R/oystercatcher.R
59488c7dbf7c7076865588eb014a7518 *R/parse_outfile.R
413e9abcb351791f9fe987191fd27903 *R/read_icv.R
a60a89c79b13294c067a42eeead229ca *R/read_tcf.R
2b749bbfb9b40beb9795dd644eb12856 *R/read_tdf.R
02d02f59664d8983050584c348416fa9 *R/rtrim-pkg.R
35fe1af31fc5c153525c18f9cc4198a3 *R/skylark.R
e30bc41f8413ca16eb7903fa4192df9b *R/trim.R
b37170f5f8fd3fece8f2a5485cac330c *R/trim_estimate.R
d24936c707ebf51a8d6a78db5fdd2508 *R/trim_gof.R
e51546b50d01776ab84ee36ca57d66e5 *R/trim_heatmap.R
844c3681bf2472b4c90d2c8bb8b990fa *R/trim_index.R
6707a618bc235926e23dc36ce5d83518 *R/trim_overall.R
8bced4dce3681392e7381d2490266ca5 *R/trim_post.R
2e4a1eae89ebf6f707eda9b26d64c307 *R/trim_refine.R
11596d42b40598f422bf2d2fd1cd1003 *R/trim_smooth.R
2544fe3feb69eaa38139f6cdd554cfbf *R/trim_wald.R
adab40487a331055360e452bd6da9765 *R/trim_workhorse.R
0dd53903c4ad5efb9d09a18807cb5930 *R/trim_workhorse_241.R
5f221bbf08ee3f5dac1815bae1b8d41b *R/utils.R
3b1c7826eacf780891ef144afb7e55c8 *build/vignette.rds
2bb305352b4428e5f34fc8c18735ab28 *data/oystercatcher.RData
1157e7556f2650f58e6f9fdb2c27c644 *data/skylark.RData
c255b3042486b48f540ef6c9495ab196 *data/skylark2.RData
230d2a00a30d3f01e76b4ce2b9a570c9 *inst/doc/FAQ.Rmd
0a4e7486f5a0502f3b5a772a20352acf *inst/doc/FAQ.html
a13cdba5e08587bc93be34e3fc64fe7b *inst/doc/Skylark_example.R
0fed0f1e43d3990da31a7d749cce24e9 *inst/doc/Skylark_example.Rmd
2447d6428844f59329394a47cf909abe *inst/doc/Skylark_example.html
f777830b5f52a48ff4bc45963c7dd3a4 *inst/doc/TRIM_methods_v2.pdf
1104a6af8e21ad55fbacce5848b26565 *inst/doc/TRIM_methods_v2.pdf.asis
9d99217cf239a12053293c93e60fc46b *inst/doc/rtrim_2_extensions.R
414e7cf4d765cae04bfe3aa799fdcffe *inst/doc/rtrim_2_extensions.Rmd
9da17a35a991301c9ed46f4d523684b6 *inst/doc/rtrim_2_extensions.html
941d80a770695d4d7eea9cdb03555a2f *inst/doc/rtrim_confidence_intervals.R
a3488652e4908f27aeaead4382faf88e *inst/doc/rtrim_confidence_intervals.Rmd
f5103df98074e9c7e6eb109c052fde65 *inst/doc/rtrim_confidence_intervals.html
c082b32981c55b4cd725e81babeb9f2b *inst/doc/rtrim_for_TRIM_users.R
d18b9a62c3c43ed396b94bcb5aa5e5b4 *inst/doc/rtrim_for_TRIM_users.Rmd
847af9e42354ef956e09364c06b359fc *inst/doc/rtrim_for_TRIM_users.html
a4ba0c37581f0348ceda1a2934408676 *inst/doc/taming_overdispersion.R
af3d7932fec5292daad8916f469d532f *inst/doc/taming_overdispersion.Rmd
d5957794f596102519bd3fb573e88feb *inst/doc/taming_overdispersion.html
49e8bec7489da44a48194367c5aa0b31 *man/check_observations.Rd
c51f1e446c2b4ed247ca24e95662ff07 *man/ci_multipliers.Rd
408308a124249ff64b6d2f336ac0f350 *man/coef.trim.Rd
e3092466426e253c8996301f3be534fa *man/confint.trim.Rd
9ae1ff129cc62efc051a7810c1c1219d *man/count_summary.Rd
31387e6b1d70cb9f2b7191b44991aa49 *man/get_coef.Rd
799dda69d5ab2988d59ee50191159cbc *man/get_deletion.Rd
762e039eb3fac42152d1994d18f2ab5f *man/get_estimation_method.Rd
75d6f7521439db14199a5acba63460d7 *man/get_gof.Rd
97dee044b0b3e4af4cf0045a836218dc *man/get_model.Rd
fefde336f6e1c3e9803237eb77cbc8bd *man/get_n_site.Rd
5841e2bb2d5382e4ac671cace9ac904a *man/get_n_time.Rd
8b8558ae36e750ebbcdd35cf9945e0c8 *man/get_overal_imputed_slope.Rd
d155f13f2712952155ee6dd0c03e5ad1 *man/get_time_indices.Rd
aa8831a969e6ae429a19bdbb196c2264 *man/get_time_totals.Rd
9249399c16452615aa7b566ac7cbfb90 *man/get_version.Rd
d2b7c2612d8b89d7a722ad67fcc6401c *man/get_wald.Rd
25eaa28eb1aaa07a2d7dcf2ce26ba0fd *man/gof.Rd
74024fb6ce2fb00c10e8e854029655f4 *man/heatmap.Rd
3427232d8dd87011ff50071a317be8cd *man/index.Rd
46ff9f54d0eb40650cf937cba491fa0a *man/now_what.Rd
1512650d4fa02cec90fa454ba3eaf7b4 *man/overall.Rd
6e9a95ad95250ef443dc76e24c0bc244 *man/overdispersion.Rd
b093b00e8a52f0cebf223963b30fea7f *man/oystercatcher.Rd
c1aad712e634e14f185c888706b1ecc1 *man/pieces_from_changepoints.Rd
d41d398e109159bd55b78a46f8df7f48 *man/plot.trim.index.Rd
ea4e7bf67443f901168a68fb85cfafc5 *man/plot.trim.overall.Rd
e81563c2e7298377ceea881ffa24ba3c *man/plot.trim.smooth.Rd
fd9bdd57a2b95498123c8938f112ad74 *man/plot.trim.totals.Rd
6633ddd3a9acebe3caf92d64ac2e1ff8 *man/print.count.summary.Rd
94c29235d3d5d4420f059b27b34e9e44 *man/print.trim.Rd
3bc7d2a8951decfbb9de3e537f3e2860 *man/print.trim.gof.Rd
34737c44d2d14b733f73dd09f2306014 *man/print.trim.overall.Rd
2f82896438fe16de775eea7c3f4d7bd1 *man/print.trim.wald.Rd
4d91976e322a9a93d12c8d48c74f4366 *man/print.trimcommand.Rd
56b2cef9c2df368b7701b979ad746c73 *man/read_tcf.Rd
7cb072c02aca788fc5e4fc056afefa99 *man/read_tdf.Rd
0bcc8dc9507947c94ef93ba6ed65403c *man/read_tof.Rd
3fdffe6d72c5206c29e22434a6958211 *man/read_vcv.Rd
b043cba7659e5e8bc7b4701b633dab77 *man/results.Rd
27ae008d9668ce0a885a4398861aed07 *man/rtrim-package.Rd
d2912c426a43abf6ed1e59ebb0fbfae0 *man/serial_correlation.Rd
d3fff186df772c448a100d5093b38827 *man/set_trim_verbose.Rd
cab652b91c11823bb5994077e6ccee08 *man/skylark.Rd
aaa42ba745f1428f8340278bce93e494 *man/summary.trim.Rd
8dac54a7e6d1b107802e566507ae0f9d *man/summary.trimbatch.Rd
50857d8363158cbdb6f67b97dfa0021b *man/totals.Rd
6c31a8d9d76b6b77d936f5eaa347062e *man/trendlines.Rd
e01ee5d090c284dc26109bee354d1dbf *man/trim.Rd
3910620886ac6d650478573df9bdd5cf *man/trim_estimate.Rd
1a8ad024c8c1685b3c08388165525198 *man/trim_refine.Rd
d742e22a0feca416b762a73958c7346d *man/trim_workhorse.Rd
42c34f9a77e82ffe43fdbfc0e036a58c *man/trimcommand.Rd
28916afdbfcbd574783bc4066250c6c0 *man/vcov.trim.Rd
372b490e980e5b7845fe4f203ba88f00 *man/wald.Rd
0eccef9dc39ab8188bbc2f9e73197d9c *tests/testthat.R
bd4a9da5cee2acac14b87a250136a568 *tests/testthat/outfiles/skylark-1a.out
9c581ddea5efdfc29208a17a04be3e0e *tests/testthat/outfiles/skylark-1a.tcf
6d011524a58aae5637e5c68ef0a5093a *tests/testthat/outfiles/skylark-1b.out
afbe9ef18598655fe5a3e1f90248074d *tests/testthat/outfiles/skylark-1b.tcf
964fd26b7f2b030cfaec50014634b5df *tests/testthat/outfiles/skylark-1c.out
35e388614f27d587b0f57b478138e60d *tests/testthat/outfiles/skylark-1c.tcf
83ccc60ef3651df864334e2d94d72394 *tests/testthat/outfiles/skylark-1d.out
622ec931d625ea99e80d2ecda473776e *tests/testthat/outfiles/skylark-1d.tcf
1a60bcd43743b12ec16825d97bfb3e05 *tests/testthat/outfiles/skylark-1e.out
ddcd539b2da64306208cc3eeb3dfda7e *tests/testthat/outfiles/skylark-1e.tcf
a4cc31c551cf7f68fcec814c4ca84aa2 *tests/testthat/outfiles/skylark-1f.out
50d2ae621b61911ec2c5360c5363b616 *tests/testthat/outfiles/skylark-1f.tcf
8c07979bd4554e7d19c2855e57ec08f0 *tests/testthat/outfiles/skylark-2a.out
7e24c11a2b9ea941aa1d94e6c9d3ec36 *tests/testthat/outfiles/skylark-2a.tcf
8058903f73ba8309ca741bd352d8e21a *tests/testthat/outfiles/skylark-2b.out
20e7995d6cf749b741cb2d4049b93320 *tests/testthat/outfiles/skylark-2b.tcf
ad427ca2b8952fe73aaefb8c937f6b6b *tests/testthat/outfiles/skylark-3a.out
b1f8acc472fe83bcd0ca233fc3bd4cc0 *tests/testthat/outfiles/skylark-3a.tcf
dc990d6c8669b20cdbef91a37832a372 *tests/testthat/outfiles/skylark-4a.out
3f5408a6f0ff7578eb769c170747d0bc *tests/testthat/outfiles/skylark-4a.tcf
66fdf61d7823d9ed6e7c8365095ae8e0 *tests/testthat/outfiles/skylark-4b.out
5e65d7d99e6bc31e0d8f7e5c285590e8 *tests/testthat/outfiles/skylark-4b.tcf
569bd581e5d66a858ca715c011db319c *tests/testthat/outfiles/skylark-4c.out
7d080e73035a6c77723fd4c3071638ff *tests/testthat/outfiles/skylark-4c.tcf
d3876271fabb3ca70a9db5b302ae46c8 *tests/testthat/outfiles/skylark-4d.out
548e7833d6c7eacf4a5b76d542f85127 *tests/testthat/outfiles/skylark-4d.tcf
7d42ae1141ba2dee92e4048a36e8fc74 *tests/testthat/outfiles/skylark-4e.out
64d9d216203401114a24555d70a049d0 *tests/testthat/outfiles/skylark-4e.tcf
4c3e906ff2a07dd702f87433c08d316f *tests/testthat/outfiles/skylark-4f.out
402df6c54a09ffbc412d5ca471b77d3b *tests/testthat/outfiles/skylark-4f.tcf
f8d897a7287014bda27ebe78a840e8e8 *tests/testthat/outfiles/skylark-minimal.tcf
1fc38be82632b3c2a8eb26e399733691 *tests/testthat/outfiles/skylark-model2-f.csv
cd52d392cbbf3583a7b9da2c00dd7e61 *tests/testthat/outfiles/skylark-x1.ocv
afb37670f02162a4e97ebca4dadac7fc *tests/testthat/outfiles/skylark-x1.out
918e5232c9d08d54e937d1c546c9814f *tests/testthat/outfiles/skylark-x1.tcf
e1996bf32b699ccbb32d1de17c3e1ac3 *tests/testthat/outfiles/skylark-x2.out
8d6aa36e643fd07a8e1152a8272dbc7e *tests/testthat/outfiles/skylark-x2.tcf
e320f35fa8a59bfe552cc9f18a624e1b *tests/testthat/outfiles/skylark-x3.out
97a879854a7149c69bd4ce9aabc7ee84 *tests/testthat/outfiles/skylark-x3.tcf
e850bc5595c6c8796d04f9bed41c91ba *tests/testthat/outfiles/skylark.dat
db832c7cf165022bedc585b19ce89c67 *tests/testthat/outfiles/skylark_wt.dat
5a49b173c101c602053ee051b0a6e254 *tests/testthat/outfiles/skylark_yr.dat
0d16dc2783fd8fbb23d8983d679df9af *tests/testthat/outfiles/test_skylark_1a_to_2b.R
fc369344f637596d84552c679bdaaa0b *tests/testthat/test_checks.R
25c7d3dd3f9f3486154e6d8bff1a3a7c *tests/testthat/test_errors.R
de3b559b9b2758d03297429ed599e20d *tests/testthat/test_tcf.R
2e7441b3ac6e546e9023516b79c23067 *tests/testthat/test_tdf.R
ddc437028fbf555b0109a19fe12b91c8 *tests/testthat/test_trim.R
5abdd250efeb898dc338918a54f05901 *tests/testthat/test_utils.R
8fe1c0cb64215b51e8932d287bd928dd *tests/testthat/testdata/131183.RData
230d2a00a30d3f01e76b4ce2b9a570c9 *vignettes/FAQ.Rmd
0fed0f1e43d3990da31a7d749cce24e9 *vignettes/Skylark_example.Rmd
1104a6af8e21ad55fbacce5848b26565 *vignettes/TRIM_methods_v2.pdf.asis
225046da22166ea6ce9f57311afab43a *vignettes/UIndex_Oystercatcher_output.RData
414e7cf4d765cae04bfe3aa799fdcffe *vignettes/rtrim_2_extensions.Rmd
a3488652e4908f27aeaead4382faf88e *vignettes/rtrim_confidence_intervals.Rmd
d18b9a62c3c43ed396b94bcb5aa5e5b4 *vignettes/rtrim_for_TRIM_users.Rmd
af3d7932fec5292daad8916f469d532f *vignettes/taming_overdispersion.Rmd
