Last updated on 2025-12-21 17:51:02 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| CALIBERrfimpute | 2 | 11 | |
| Rdiagnosislist | 4 | 9 |
Current CRAN status: NOTE: 2, OK: 11
Version: 1.0-7
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Anoop Shah <anoop@doctors.org.uk>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 4, OK: 9
Version: 1.4.0
Check: examples
Result: ERROR
Running examples in ‘Rdiagnosislist-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: addWordnet
> ### Title: Use WordNet to assist concept database creation
> ### Aliases: addWordnet
>
> ### ** Examples
>
> WORDNET <- data.table::data.table(cat = c('noun.body', 'noun.state'),
+ wordnetId = bit64::as.integer64('1', '2'),
+ synonyms = list(c('heart', 'pump', 'ticker'),
+ c('infection', 'infectious')),
+ parents = list('cardiovascular system',
+ 'pathologic process'),
+ adj = list('cardiac', 'infectious'))
> # Add Wordnet synonyms to a concept database table
> SNOMED <- sampleSNOMED()
> CDB_TABLE <- description(c('Heart', 'Infection'),
+ include_synonyms = TRUE)[type == 'Synonym',
+ list(conceptId, term = paste0(' ', tolower(term), ' '))]
> addWordnet(CDB_TABLE, 'noun.state', WORDNET)
Adding categories for noun.state
Error in `[.data.table`(MERGELINK_SYNGROUPS, , `:=`(OK, length(setdiff(conceptIds_WN[[1]], :
attempt access index 3/3 in VECTOR_ELT
Calls: addWordnet -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.4.0
Check: examples
Result: ERROR
Running examples in ‘Rdiagnosislist-Ex.R’ failed
The error most likely occurred in:
> ### Name: addWordnet
> ### Title: Use WordNet to assist concept database creation
> ### Aliases: addWordnet
>
> ### ** Examples
>
> WORDNET <- data.table::data.table(cat = c('noun.body', 'noun.state'),
+ wordnetId = bit64::as.integer64('1', '2'),
+ synonyms = list(c('heart', 'pump', 'ticker'),
+ c('infection', 'infectious')),
+ parents = list('cardiovascular system',
+ 'pathologic process'),
+ adj = list('cardiac', 'infectious'))
> # Add Wordnet synonyms to a concept database table
> SNOMED <- sampleSNOMED()
> CDB_TABLE <- description(c('Heart', 'Infection'),
+ include_synonyms = TRUE)[type == 'Synonym',
+ list(conceptId, term = paste0(' ', tolower(term), ' '))]
> addWordnet(CDB_TABLE, 'noun.state', WORDNET)
Adding categories for noun.state
Error in `[.data.table`(MERGELINK_SYNGROUPS, , `:=`(OK, length(setdiff(conceptIds_WN[[1]], :
attempt access index 3/3 in VECTOR_ELT
Calls: addWordnet -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc