Last updated on 2025-12-21 17:51:03 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| BWGS | 13 | ||
| expDB | 13 | ||
| rapsimng | 13 | ||
| rtiddlywiki | 1 | 12 | |
| taskqueue | 13 | ||
| weaana | 13 |
Current CRAN status: NOTE: 13
Version: 0.2.1
Check: Rd files
Result: NOTE
checkRd: (-1) bwgs.cv.Rd:27: Lost braces; missing escapes or markup?
27 | \item{geno}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded {-1, 0, 1}. Missing data are allowed and coded as NA.}
| ^
checkRd: (-1) bwgs.cv.Rd:59: Lost braces; missing escapes or markup?
59 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.}
| ^
checkRd: (-1) bwgs.predict.Rd:25: Lost braces; missing escapes or markup?
25 | \item{geno_train}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA.}
| ^
checkRd: (-1) bwgs.predict.Rd:29: Lost braces; missing escapes or markup?
29 | \item{geno_target}{Matrix (z x m) of genotypes for the target population: z lines with the same m markers as in geno_train. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA. Other arguments are identical to those of bwgs.cv, except pop_reduct_method, nTimes and nFolds, since the prediction is run only once, using the whole training population for model estimation, then applied to the target population.}
| ^
checkRd: (-1) bwgs.predict.Rd:49: Lost braces; missing escapes or markup?
49 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 0.5.2
Check: tests
Result: ERROR
Running 'testthat.R' [9s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(rtiddlywiki)
> test_check("rtiddlywiki")
Starting test tiddlywiki server...
Error in httr2::req_perform(httr2::req_error(req, is_error = function(resp) FALSE)) :
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Could not connect to server [127.0.0.1]:
Failed to connect to 127.0.0.1 port 9090 after 2056 ms: Could not connect to server
Saving _problems/test-word-17.R
Saving _problems/test-word-18.R
[ FAIL 2 | WARN 1 | SKIP 21 | PASS 81 ]
══ Skipped tests (21) ══════════════════════════════════════════════════════════
• !is_test_tw() is TRUE (1): 'test-tiddler.R:2:5'
• On CRAN (20): 'test-rmarkdown.R:97:5', 'test-rmarkdown.R:115:5',
'test-rmarkdown.R:132:5', 'test-rmarkdown.R:149:5', 'test-rmarkdown.R:169:5',
'test-rmarkdown.R:186:5', 'test-rmarkdown.R:201:5', 'test-rmarkdown.R:217:5',
'test-rmarkdown.R:236:5', 'test-rmarkdown.R:253:5', 'test-rmarkdown.R:268:5',
'test-rmarkdown.R:283:5', 'test-rmarkdown.R:302:5', 'test-rmarkdown.R:327:5',
'test-rmarkdown.R:349:5', 'test-rmarkdown.R:371:5', 'test-rmarkdown.R:394:5',
'test-rmarkdown.R:416:5', 'test-rmarkdown.R:440:5', 'test-rmarkdown.R:474:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-word.R:17:5'): Word to Markdown conversion without embedding images works ──
Expected `word_to_md(...)` not to throw any errors.
Actually got a <simpleError> with message:
Cannot find image fe36a2233fa96369704418cd1a62408d79da2ed1.png
── Error ('test-word.R:18:5'): Word to Markdown conversion without embedding images works ──
Error in `file(con, "r")`: cannot open the connection
Backtrace:
▆
1. └─base::readLines(output_file) at test-word.R:18:5
2. └─base::file(con, "r")
[ FAIL 2 | WARN 1 | SKIP 21 | PASS 81 ]
Error:
! Test failures.
Stopping test widdlywiki server...
Cleanup tempory test folderExecution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13