Last updated on 2025-12-21 11:50:25 CET.
| Package | ERROR | WARN | OK |
|---|---|---|---|
| bupaR | 4 | 9 | |
| edeaR | 4 | 9 |
Current CRAN status: WARN: 4, OK: 9
Version: 1.0.0
Check: for code/documentation mismatches
Result: WARN
Codoc mismatches from Rd file 'fill.Rd':
fill
Code: function(data, ..., .by = NULL, .direction = c("down", "up",
"downup", "updown"))
Docs: function(data, ..., .direction = c("down", "up", "downup",
"updown"))
Argument names in code not in docs:
.by
Mismatches in argument names:
Position: 3 Code: .by Docs: .direction
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: ERROR: 4, OK: 9
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(edeaR)
Attaching package: 'edeaR'
The following object is masked from 'package:base':
setdiff
>
> test_check("edeaR")
Saving _problems/test_idle_time-9.R
Saving _problems/test_idle_time-28.R
Saving _problems/test_idle_time-48.R
Saving _problems/test_idle_time-69.R
Saving _problems/test_idle_time-90.R
Saving _problems/test_idle_time-114.R
Saving _problems/test_idle_time-136.R
Saving _problems/test_idle_time-159.R
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 106 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_idle_time.R:8:3'): test idle_time attr 'units' set when arg 'units' = 'auto' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "log", units = "auto") at test_idle_time.R:8:3
2. ├─edeaR::idle_time(., level = "log", units = "auto")
3. └─edeaR:::idle_time.eventlog(., level = "log", units = "auto")
4. └─edeaR (local) FUN(log = log, units = units)
5. └─edeaR:::idle_time_case(log, units)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:27:3'): test idle_time on eventlog with arg 'level' = 'log' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "log", units = "mins") at test_idle_time.R:27:3
2. ├─edeaR::idle_time(., level = "log", units = "mins")
3. └─edeaR:::idle_time.eventlog(., level = "log", units = "mins")
4. └─edeaR (local) FUN(log = log, units = units)
5. └─edeaR:::idle_time_case(log, units)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:47:3'): test idle_time on eventlog with arg 'level' = 'trace' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "trace", units = "mins") at test_idle_time.R:47:3
2. ├─edeaR::idle_time(., level = "trace", units = "mins")
3. ├─edeaR:::idle_time.eventlog(., level = "trace", units = "mins")
4. │ └─edeaR (local) FUN(log = log, units = units)
5. │ └─log %>% idle_time_case(units = units)
6. └─edeaR:::idle_time_case(., units = units)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:68:3'): test idle_time on eventlog with arg 'level' = 'case' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "case", units = "mins") at test_idle_time.R:68:3
2. ├─edeaR::idle_time(., level = "case", units = "mins")
3. └─edeaR:::idle_time.eventlog(., level = "case", units = "mins")
4. └─edeaR (local) FUN(log = log, units = units)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:89:3'): test idle_time on eventlog with arg 'level' = 'resource' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "RID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "resource", units = "mins") at test_idle_time.R:89:3
2. ├─edeaR::idle_time(., level = "resource", units = "mins")
3. └─edeaR:::idle_time.eventlog(., level = "resource", units = "mins")
4. └─edeaR (local) FUN(log = log, units = units)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:113:3'): test idle_time attr 'units' set when arg 'units' = 'auto' on grouped_eventlog ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., data = map(data, fun, ...))`: i In argument: `data = map(data, fun, ...)`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
── Error ('test_idle_time.R:135:3'): test idle_time on activitylog for attr 'units' set when arg 'units' = 'auto' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients_act %>% idle_time(level = "log", units = "auto") at test_idle_time.R:135:3
2. ├─edeaR::idle_time(., level = "log", units = "auto")
3. └─edeaR:::idle_time.activitylog(., level = "log", units = "auto")
4. └─edeaR:::idle_time.eventlog(...)
5. └─edeaR (local) FUN(log = log, units = units)
6. └─edeaR:::idle_time_case(log, units)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:158:3'): test idle_time on grouped_activitylog for attr 'units' set when arg 'units' = 'auto' ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., data = map(data, fun, ...))`: i In argument: `data = map(data, fun, ...)`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 106 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘filters.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘filters.Rmd’
--- re-building ‘metrics.Rmd’ using rmarkdown
Quitting from metrics.Rmd:33-36 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
---
Backtrace:
▆
1. ├─patients %>% idle_time("resource", units = "days")
2. ├─edeaR::idle_time(., "resource", units = "days")
3. └─edeaR:::idle_time.eventlog(., "resource", units = "days")
4. └─edeaR (local) FUN(log = log, units = units)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'metrics.Rmd' failed with diagnostics:
attempt access index 8/8 in VECTOR_ELT
--- failed re-building ‘metrics.Rmd’
--- re-building ‘queue.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘queue.Rmd’
--- re-building ‘work_schedules.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘work_schedules.Rmd’
SUMMARY: processing the following file failed:
‘metrics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(edeaR)
Attaching package: 'edeaR'
The following object is masked from 'package:base':
setdiff
>
> test_check("edeaR")
Saving _problems/test_idle_time-9.R
Saving _problems/test_idle_time-28.R
Saving _problems/test_idle_time-48.R
Saving _problems/test_idle_time-69.R
Saving _problems/test_idle_time-90.R
Saving _problems/test_idle_time-114.R
Saving _problems/test_idle_time-136.R
Saving _problems/test_idle_time-159.R
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 106 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_idle_time.R:8:3'): test idle_time attr 'units' set when arg 'units' = 'auto' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "log", units = "auto") at test_idle_time.R:8:3
2. ├─edeaR::idle_time(., level = "log", units = "auto")
3. └─edeaR:::idle_time.eventlog(., level = "log", units = "auto")
4. └─edeaR (local) FUN(log = log, units = units)
5. └─edeaR:::idle_time_case(log, units)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:27:3'): test idle_time on eventlog with arg 'level' = 'log' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "log", units = "mins") at test_idle_time.R:27:3
2. ├─edeaR::idle_time(., level = "log", units = "mins")
3. └─edeaR:::idle_time.eventlog(., level = "log", units = "mins")
4. └─edeaR (local) FUN(log = log, units = units)
5. └─edeaR:::idle_time_case(log, units)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:47:3'): test idle_time on eventlog with arg 'level' = 'trace' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "trace", units = "mins") at test_idle_time.R:47:3
2. ├─edeaR::idle_time(., level = "trace", units = "mins")
3. ├─edeaR:::idle_time.eventlog(., level = "trace", units = "mins")
4. │ └─edeaR (local) FUN(log = log, units = units)
5. │ └─log %>% idle_time_case(units = units)
6. └─edeaR:::idle_time_case(., units = units)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:68:3'): test idle_time on eventlog with arg 'level' = 'case' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "case", units = "mins") at test_idle_time.R:68:3
2. ├─edeaR::idle_time(., level = "case", units = "mins")
3. └─edeaR:::idle_time.eventlog(., level = "case", units = "mins")
4. └─edeaR (local) FUN(log = log, units = units)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:89:3'): test idle_time on eventlog with arg 'level' = 'resource' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "RID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "resource", units = "mins") at test_idle_time.R:89:3
2. ├─edeaR::idle_time(., level = "resource", units = "mins")
3. └─edeaR:::idle_time.eventlog(., level = "resource", units = "mins")
4. └─edeaR (local) FUN(log = log, units = units)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:113:3'): test idle_time attr 'units' set when arg 'units' = 'auto' on grouped_eventlog ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., data = map(data, fun, ...))`: i In argument: `data = map(data, fun, ...)`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
── Error ('test_idle_time.R:135:3'): test idle_time on activitylog for attr 'units' set when arg 'units' = 'auto' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients_act %>% idle_time(level = "log", units = "auto") at test_idle_time.R:135:3
2. ├─edeaR::idle_time(., level = "log", units = "auto")
3. └─edeaR:::idle_time.activitylog(., level = "log", units = "auto")
4. └─edeaR:::idle_time.eventlog(...)
5. └─edeaR (local) FUN(log = log, units = units)
6. └─edeaR:::idle_time_case(log, units)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:158:3'): test idle_time on grouped_activitylog for attr 'units' set when arg 'units' = 'auto' ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., data = map(data, fun, ...))`: i In argument: `data = map(data, fun, ...)`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 106 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(edeaR)
Attaching package: 'edeaR'
The following object is masked from 'package:base':
setdiff
>
> test_check("edeaR")
Saving _problems/test_idle_time-9.R
Saving _problems/test_idle_time-28.R
Saving _problems/test_idle_time-48.R
Saving _problems/test_idle_time-69.R
Saving _problems/test_idle_time-90.R
Saving _problems/test_idle_time-114.R
Saving _problems/test_idle_time-136.R
Saving _problems/test_idle_time-159.R
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 106 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_idle_time.R:8:3'): test idle_time attr 'units' set when arg 'units' = 'auto' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "log", units = "auto") at test_idle_time.R:8:3
2. ├─edeaR::idle_time(., level = "log", units = "auto")
3. └─edeaR:::idle_time.eventlog(., level = "log", units = "auto")
4. └─edeaR (local) FUN(log = log, units = units)
5. └─edeaR:::idle_time_case(log, units)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:27:3'): test idle_time on eventlog with arg 'level' = 'log' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "log", units = "mins") at test_idle_time.R:27:3
2. ├─edeaR::idle_time(., level = "log", units = "mins")
3. └─edeaR:::idle_time.eventlog(., level = "log", units = "mins")
4. └─edeaR (local) FUN(log = log, units = units)
5. └─edeaR:::idle_time_case(log, units)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:47:3'): test idle_time on eventlog with arg 'level' = 'trace' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "trace", units = "mins") at test_idle_time.R:47:3
2. ├─edeaR::idle_time(., level = "trace", units = "mins")
3. ├─edeaR:::idle_time.eventlog(., level = "trace", units = "mins")
4. │ └─edeaR (local) FUN(log = log, units = units)
5. │ └─log %>% idle_time_case(units = units)
6. └─edeaR:::idle_time_case(., units = units)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:68:3'): test idle_time on eventlog with arg 'level' = 'case' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "case", units = "mins") at test_idle_time.R:68:3
2. ├─edeaR::idle_time(., level = "case", units = "mins")
3. └─edeaR:::idle_time.eventlog(., level = "case", units = "mins")
4. └─edeaR (local) FUN(log = log, units = units)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:89:3'): test idle_time on eventlog with arg 'level' = 'resource' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "RID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "resource", units = "mins") at test_idle_time.R:89:3
2. ├─edeaR::idle_time(., level = "resource", units = "mins")
3. └─edeaR:::idle_time.eventlog(., level = "resource", units = "mins")
4. └─edeaR (local) FUN(log = log, units = units)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:113:3'): test idle_time attr 'units' set when arg 'units' = 'auto' on grouped_eventlog ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., data = map(data, fun, ...))`: i In argument: `data = map(data, fun, ...)`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
── Error ('test_idle_time.R:135:3'): test idle_time on activitylog for attr 'units' set when arg 'units' = 'auto' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients_act %>% idle_time(level = "log", units = "auto") at test_idle_time.R:135:3
2. ├─edeaR::idle_time(., level = "log", units = "auto")
3. └─edeaR:::idle_time.activitylog(., level = "log", units = "auto")
4. └─edeaR:::idle_time.eventlog(...)
5. └─edeaR (local) FUN(log = log, units = units)
6. └─edeaR:::idle_time_case(log, units)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:158:3'): test idle_time on grouped_activitylog for attr 'units' set when arg 'units' = 'auto' ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., data = map(data, fun, ...))`: i In argument: `data = map(data, fun, ...)`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 106 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘filters.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘filters.Rmd’
--- re-building ‘metrics.Rmd’ using rmarkdown
Quitting from metrics.Rmd:33-36 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
---
Backtrace:
▆
1. ├─patients %>% idle_time("resource", units = "days")
2. ├─edeaR::idle_time(., "resource", units = "days")
3. └─edeaR:::idle_time.eventlog(., "resource", units = "days")
4. └─edeaR (local) FUN(log = log, units = units)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'metrics.Rmd' failed with diagnostics:
attempt access index 8/8 in VECTOR_ELT
--- failed re-building ‘metrics.Rmd’
--- re-building ‘queue.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘queue.Rmd’
--- re-building ‘work_schedules.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘work_schedules.Rmd’
SUMMARY: processing the following file failed:
‘metrics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/41s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(edeaR)
Attaching package: 'edeaR'
The following object is masked from 'package:base':
setdiff
>
> test_check("edeaR")
Saving _problems/test_idle_time-9.R
Saving _problems/test_idle_time-28.R
Saving _problems/test_idle_time-48.R
Saving _problems/test_idle_time-69.R
Saving _problems/test_idle_time-90.R
Saving _problems/test_idle_time-114.R
Saving _problems/test_idle_time-136.R
Saving _problems/test_idle_time-159.R
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 106 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_idle_time.R:8:3'): test idle_time attr 'units' set when arg 'units' = 'auto' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "log", units = "auto") at test_idle_time.R:8:3
2. ├─edeaR::idle_time(., level = "log", units = "auto")
3. └─edeaR:::idle_time.eventlog(., level = "log", units = "auto")
4. └─edeaR (local) FUN(log = log, units = units)
5. └─edeaR:::idle_time_case(log, units)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:27:3'): test idle_time on eventlog with arg 'level' = 'log' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "log", units = "mins") at test_idle_time.R:27:3
2. ├─edeaR::idle_time(., level = "log", units = "mins")
3. └─edeaR:::idle_time.eventlog(., level = "log", units = "mins")
4. └─edeaR (local) FUN(log = log, units = units)
5. └─edeaR:::idle_time_case(log, units)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:47:3'): test idle_time on eventlog with arg 'level' = 'trace' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "trace", units = "mins") at test_idle_time.R:47:3
2. ├─edeaR::idle_time(., level = "trace", units = "mins")
3. ├─edeaR:::idle_time.eventlog(., level = "trace", units = "mins")
4. │ └─edeaR (local) FUN(log = log, units = units)
5. │ └─log %>% idle_time_case(units = units)
6. └─edeaR:::idle_time_case(., units = units)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:68:3'): test idle_time on eventlog with arg 'level' = 'case' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "case", units = "mins") at test_idle_time.R:68:3
2. ├─edeaR::idle_time(., level = "case", units = "mins")
3. └─edeaR:::idle_time.eventlog(., level = "case", units = "mins")
4. └─edeaR (local) FUN(log = log, units = units)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:89:3'): test idle_time on eventlog with arg 'level' = 'resource' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "RID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients %>% idle_time(level = "resource", units = "mins") at test_idle_time.R:89:3
2. ├─edeaR::idle_time(., level = "resource", units = "mins")
3. └─edeaR:::idle_time.eventlog(., level = "resource", units = "mins")
4. └─edeaR (local) FUN(log = log, units = units)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:113:3'): test idle_time attr 'units' set when arg 'units' = 'auto' on grouped_eventlog ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., data = map(data, fun, ...))`: i In argument: `data = map(data, fun, ...)`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
── Error ('test_idle_time.R:135:3'): test idle_time on activitylog for attr 'units' set when arg 'units' = 'auto' ──
Error in ``[.data.table`(dt, , `:=`(active = cumsum(activate), next_TS = shift(TS, type = "lead")), by = "CID")`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. ├─patients_act %>% idle_time(level = "log", units = "auto") at test_idle_time.R:135:3
2. ├─edeaR::idle_time(., level = "log", units = "auto")
3. └─edeaR:::idle_time.activitylog(., level = "log", units = "auto")
4. └─edeaR:::idle_time.eventlog(...)
5. └─edeaR (local) FUN(log = log, units = units)
6. └─edeaR:::idle_time_case(log, units)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test_idle_time.R:158:3'): test idle_time on grouped_activitylog for attr 'units' set when arg 'units' = 'auto' ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., data = map(data, fun, ...))`: i In argument: `data = map(data, fun, ...)`.
Caused by error in `map()`:
i In index: 1.
Caused by error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
[ FAIL 8 | WARN 0 | SKIP 0 | PASS 106 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc