Last updated on 2026-05-02 23:50:53 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.0 | 13.23 | 299.03 | 312.26 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.9.0 | 9.71 | 193.05 | 202.76 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.9.0 | 21.00 | 445.21 | 466.21 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.9.0 | 23.00 | 497.05 | 520.05 | OK | |
| r-devel-windows-x86_64 | 0.9.0 | 19.00 | 230.00 | 249.00 | ERROR | |
| r-patched-linux-x86_64 | 0.9.0 | 8.99 | 271.44 | 280.43 | OK | |
| r-release-linux-x86_64 | 0.9.0 | 11.89 | 272.71 | 284.60 | OK | |
| r-release-macos-arm64 | 0.9.0 | 4.00 | 59.00 | 63.00 | OK | |
| r-release-macos-x86_64 | 0.9.0 | 10.00 | 236.00 | 246.00 | OK | |
| r-release-windows-x86_64 | 0.9.0 | 17.00 | 243.00 | 260.00 | OK | |
| r-oldrel-macos-arm64 | 0.9.0 | 3.00 | 59.00 | 62.00 | OK | |
| r-oldrel-macos-x86_64 | 0.9.0 | 10.00 | 226.00 | 236.00 | OK | |
| r-oldrel-windows-x86_64 | 0.9.0 | 22.00 | 322.00 | 344.00 | OK |
Version: 0.9.0
Check: examples
Result: ERROR
Running examples in 'crosstable-Ex.R' failed
The error most likely occurred in:
> ### Name: apply_labels
> ### Title: Batch set variable labels
> ### Aliases: apply_labels
>
> ### ** Examples
>
> iris %>%
+ apply_labels(Sepal.Length="Length of Sepal",
+ Sepal.Width="Width of Sepal") %>%
+ crosstable()
Error in `map2()`:
ℹ In index: 5.
ℹ With name: Species.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─... %>% crosstable()
2. ├─crosstable::crosstable(.)
3. │ └─crosstable:::cross_by(...)
4. │ ├─... %>% list_rbind()
5. │ └─purrr::imap(...)
6. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─crosstable:::cross_categorical(...)
13. │ └─crosstable:::summarize_categorical_single(...)
14. │ └─... %>% select(x = 1, n = 2)
15. ├─purrr::list_rbind(.)
16. │ └─purrr:::check_list_of_data_frames(x)
17. │ └─vctrs::obj_check_list(x, call = error_call)
18. ├─dplyr::select(., x = 1, n = 2)
19. ├─base::as.data.frame(.)
20. ├─crosstable:::as.data.frame.table(.)
21. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
22. │ ├─base::eval(ex)
23. │ │ └─base::eval(ex)
24. │ └─base::data.frame(...)
25. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
26. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
27. │ └─base::stop("row names contain missing values")
28. └─base::.handleSimpleError(...)
29. └─purrr (local) h(simpleError(msg, call))
30. └─cli::cli_abort(...)
31. └─rlang::abort(...)
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.9.0
Check: tests
Result: ERROR
Running 'testthat.R' [59s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(crosstable)
>
> test_check("crosstable")
Starting 2 test processes.
Saving _problems/test-by_numeric-27.R
Saving _problems/test-by_numeric-119.R
Saving _problems/test-compact-66.R
Saving _problems/test-by_factor-23.R
Saving _problems/test-by_factor-38.R
Saving _problems/test-by_factor-57.R
Saving _problems/test-by_factor-80.R
Saving _problems/test-by_factor-100.R
Saving _problems/test-by_factor-142.R
Saving _problems/test-by_factor-184.R
Saving _problems/test-by_factor-194.R
Saving _problems/test-by_factor-215.R
Saving _problems/test-by_factor-227.R
Saving _problems/test-by_factor-258.R
Saving _problems/test-by_factor-285.R
Saving _problems/test-by_factor-294.R
Saving _problems/test-by_factor-302.R
Saving _problems/test-effects-9.R
Saving _problems/test-effects-80.R
Saving _problems/test-effects-95.R
Saving _problems/test-flextable-2.R
Saving _problems/test-crosstable-6.R
Saving _problems/test-crosstable-28.R
Saving _problems/test-options-4.R
Saving _problems/test-pivot-11.R
Saving _problems/test-tests-11.R
Saving _problems/test-tests-98.R
Saving _problems/test-tests-108.R
Saving _problems/test-selection-9.R
Saving _problems/test-selection-82.R
Saving _problems/test-selection-181.R
Saving _problems/test-selection-216.R
Saving _problems/test-selection-240.R
Saving _problems/test-selection-251.R
[ FAIL 34 | WARN 0 | SKIP 19 | PASS 223 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• On CRAN (19): 'test-effects_snap.R:2:1', 'test-officer.R:1:1',
'test-by_numeric.R:126:1', 'test-cbind.R:1:1', 'test-compact.R:5:1',
'test-compact.R:20:1', 'test-compact.R:43:1', 'test-by_factor.R:334:1',
'test-crosstable.R:137:1', 'test-format.R:4:1', 'test-format.R:65:1',
'test-labels.R:7:1', 'test-labels.R:40:1', 'test-labels.R:197:3',
'test-labels.R:212:1', 'test-quick_surv.R:1:1', 'test-methods.R:14:1',
'test-tests.R:85:3', 'test-selection.R:259:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-by_numeric.R:27:3'): by factor if numeric <= 3 levels ──────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: cyl.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable::crosstable(...) at test-by_numeric.R:27:3
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_by(...)
13. │ └─crosstable:::summarize_categorical_single(...)
14. │ └─... %>% select(x = 1, n = 2)
15. ├─purrr::list_rbind(.)
16. │ └─purrr:::check_list_of_data_frames(x)
17. │ └─vctrs::obj_check_list(x, call = error_call)
18. ├─dplyr::select(., x = 1, n = 2)
19. ├─base::as.data.frame(.)
20. ├─crosstable:::as.data.frame.table(.)
21. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
22. │ ├─base::eval(ex)
23. │ │ └─base::eval(ex)
24. │ └─base::data.frame(...)
25. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
26. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
27. │ └─base::stop("row names contain missing values")
28. └─base::.handleSimpleError(...)
29. └─purrr (local) h(simpleError(msg, call))
30. └─cli::cli_abort(...)
31. └─rlang::abort(...)
── Error ('test-by_numeric.R:117:3'): Function arguments work ──────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 3.
i With name: am.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable::crosstable(...) at test-by_numeric.R:117:3
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_by(...)
13. │ └─marginSums(nn3, margin = 2) %>% as.data.frame(responseName = "n_col_na")
14. ├─purrr::list_rbind(.)
15. │ └─purrr:::check_list_of_data_frames(x)
16. │ └─vctrs::obj_check_list(x, call = error_call)
17. ├─base::as.data.frame(., responseName = "n_col_na")
18. ├─crosstable:::as.data.frame.table(., responseName = "n_col_na")
19. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
20. │ ├─base::eval(ex)
21. │ │ └─base::eval(ex)
22. │ └─base::data.frame(...)
23. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
24. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
25. │ └─base::stop("row names contain missing values")
26. └─base::.handleSimpleError(...)
27. └─purrr (local) h(simpleError(msg, call))
28. └─cli::cli_abort(...)
29. └─rlang::abort(...)
── Error ('test-compact.R:64:3'): Compact method OK with as_flextable() ────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: am.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─mtcars2 %>% apply_labels(am = "Engine") %>% ... at test-compact.R:64:3
2. ├─crosstable::crosstable(., c(am, vs))
3. │ └─crosstable:::cross_by(...)
4. │ ├─... %>% list_rbind()
5. │ └─purrr::imap(...)
6. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─crosstable:::cross_categorical(...)
13. │ └─crosstable:::summarize_categorical_single(...)
14. │ └─... %>% select(x = 1, n = 2)
15. ├─purrr::list_rbind(.)
16. │ └─purrr:::check_list_of_data_frames(x)
17. │ └─vctrs::obj_check_list(x, call = error_call)
18. ├─dplyr::select(., x = 1, n = 2)
19. ├─base::as.data.frame(.)
20. ├─crosstable:::as.data.frame.table(.)
21. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
22. │ ├─base::eval(ex)
23. │ │ └─base::eval(ex)
24. │ └─base::data.frame(...)
25. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
26. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
27. │ └─base::stop("row names contain missing values")
28. └─base::.handleSimpleError(...)
29. └─purrr (local) h(simpleError(msg, call))
30. └─cli::cli_abort(...)
31. └─rlang::abort(...)
── Error ('test-by_factor.R:14:3'): showNA with NA in by ───────────────────────
Error: object 'x3' not found
Backtrace:
▆
1. └─base::as.data.frame(x3)
── Error ('test-by_factor.R:29:3'): showNA without NA in by ────────────────────
Error: object 'x3' not found
Backtrace:
▆
1. └─base::as.data.frame(x3)
── Error ('test-by_factor.R:46:3'): total ──────────────────────────────────────
Error: object 'x4' not found
Backtrace:
▆
1. └─base::as.data.frame(x4)
── Error ('test-by_factor.R:65:3'): Margins without totals ─────────────────────
Error: object 'x6' not found
Backtrace:
▆
1. └─base::as.data.frame(x6)
── Error ('test-by_factor.R:85:3'): Margins with totals ────────────────────────
Error: object 'x6' not found
Backtrace:
▆
1. └─base::as.data.frame(x6)
── Error ('test-by_factor.R:126:3'): Percent pattern ───────────────────────────
Error: object 'x2' not found
Backtrace:
▆
1. └─base::as.data.frame(x2)
── Error ('test-by_factor.R:173:3'): Percent pattern - Ultimate ────────────────
Error: object 'x2' not found
Backtrace:
▆
1. └─base::as.data.frame(x2)
── Error ('test-by_factor.R:194:3'): tables with lots of NA don't cause error ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: x.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable::crosstable(df, x, by = y, total = TRUE) at test-by_factor.R:194:3
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_by(...)
13. │ └─marginSums(nn3, margin = 1) %>% as.data.frame(responseName = "n_row_na")
14. ├─purrr::list_rbind(.)
15. │ └─purrr:::check_list_of_data_frames(x)
16. │ └─vctrs::obj_check_list(x, call = error_call)
17. ├─base::as.data.frame(., responseName = "n_row_na")
18. ├─crosstable:::as.data.frame.table(., responseName = "n_row_na")
19. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
20. │ ├─base::eval(ex)
21. │ │ └─base::eval(ex)
22. │ └─base::data.frame(...)
23. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
24. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
25. │ └─base::stop("row names contain missing values")
26. └─base::.handleSimpleError(...)
27. └─purrr (local) h(simpleError(msg, call))
28. └─cli::cli_abort(...)
29. └─rlang::abort(...)
── Error ('test-by_factor.R:208:3'): Unique numeric ────────────────────────────
Error: object 'x2' not found
Backtrace:
▆
1. └─base::as.data.frame(x2)
── Error ('test-by_factor.R:226:3'): drop_levels works ─────────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: am.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─... %>% expect_equal(c("auto", "manual", "other")) at test-by_factor.R:226:3
2. ├─testthat::expect_equal(., c("auto", "manual", "other"))
3. │ └─testthat::quasi_label(enquo(object), label)
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─dplyr::pull(., variable)
6. ├─crosstable::crosstable(., am, drop_levels = FALSE)
7. │ └─crosstable:::cross_by(...)
8. │ ├─... %>% list_rbind()
9. │ └─purrr::imap(...)
10. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
11. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
12. │ ├─purrr:::with_indexed_errors(...)
13. │ │ └─base::withCallingHandlers(...)
14. │ ├─purrr:::call_with_cleanup(...)
15. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
16. │ └─crosstable:::cross_categorical(...)
17. │ └─crosstable:::summarize_categorical_single(...)
18. │ └─... %>% select(x = 1, n = 2)
19. ├─purrr::list_rbind(.)
20. │ └─purrr:::check_list_of_data_frames(x)
21. │ └─vctrs::obj_check_list(x, call = error_call)
22. ├─dplyr::select(., x = 1, n = 2)
23. ├─base::as.data.frame(.)
24. ├─crosstable:::as.data.frame.table(.)
25. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
26. │ ├─base::eval(ex)
27. │ │ └─base::eval(ex)
28. │ └─base::data.frame(...)
29. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
30. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
31. │ └─base::stop("row names contain missing values")
32. └─base::.handleSimpleError(...)
33. └─purrr (local) h(simpleError(msg, call))
34. └─cli::cli_abort(...)
35. └─rlang::abort(...)
── Error ('test-by_factor.R:253:3'): By dummy ──────────────────────────────────
Error: object 'x1' not found
Backtrace:
▆
1. └─base::as.data.frame(x1)
── Error ('test-by_factor.R:272:3'): By multiple ───────────────────────────────
Error: object 'x4' not found
Backtrace:
▆
1. └─base::as.data.frame(x4)
── Error ('test-by_factor.R:291:3'): By multiple (formula) ─────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 2.
i With name: gear.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable::crosstable(...)
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_by(...)
13. │ └─crosstable:::summarize_categorical_single(...)
14. │ └─... %>% select(x = 1, n = 2)
15. ├─purrr::list_rbind(.)
16. │ └─purrr:::check_list_of_data_frames(x)
17. │ └─vctrs::obj_check_list(x, call = error_call)
18. ├─dplyr::select(., x = 1, n = 2)
19. ├─base::as.data.frame(.)
20. ├─crosstable:::as.data.frame.table(.)
21. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
22. │ ├─base::eval(ex)
23. │ │ └─base::eval(ex)
24. │ └─base::data.frame(...)
25. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
26. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
27. │ └─base::stop("row names contain missing values")
28. └─base::.handleSimpleError(...)
29. └─purrr (local) h(simpleError(msg, call))
30. └─cli::cli_abort(...)
31. └─rlang::abort(...)
── Error ('test-by_factor.R:301:3'): By multiple warnings ──────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 3.
i With name: cyl.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─... %>% ... at test-by_factor.R:301:3
2. ├─crosstable:::expect_warning2(., class = "crosstable_multiby_wrong_class_warning")
3. │ └─testthat::expect_warning(object, ...) at ./helper-init_dataset.R:121:3
4. │ └─testthat:::expect_condition_matching_(...)
5. │ └─testthat:::quasi_capture(...)
6. │ ├─testthat (local) .capture(...)
7. │ │ └─base::withCallingHandlers(...)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─crosstable::crosstable(...)
10. │ └─crosstable:::cross_by(...)
11. │ ├─... %>% list_rbind()
12. │ └─purrr::imap(...)
13. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
14. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
15. │ ├─purrr:::with_indexed_errors(...)
16. │ │ └─base::withCallingHandlers(...)
17. │ ├─purrr:::call_with_cleanup(...)
18. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
19. │ └─crosstable:::cross_categorical(...)
20. │ └─crosstable:::summarize_categorical_by(...)
21. │ └─marginSums(nn3, margin = 1) %>% as.data.frame(responseName = "n_row_na")
22. ├─purrr::list_rbind(.)
23. │ └─purrr:::check_list_of_data_frames(x)
24. │ └─vctrs::obj_check_list(x, call = error_call)
25. ├─base::as.data.frame(., responseName = "n_row_na")
26. ├─crosstable:::as.data.frame.table(., responseName = "n_row_na")
27. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
28. │ ├─base::eval(ex)
29. │ │ └─base::eval(ex)
30. │ └─base::data.frame(...)
31. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
32. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
33. │ └─base::stop("row names contain missing values")
34. └─base::.handleSimpleError(...)
35. └─purrr (local) h(simpleError(msg, call))
36. └─cli::cli_abort(...)
37. └─rlang::abort(...)
── Error ('test-effects.R:9:3'): Effects: categorical variables ────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: am.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable::crosstable(mtcars3, am, by = vs, effect = T, effect_args = e_args) at test-effects.R:9:3
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_by(...)
13. │ └─marginSums(nn3, margin = 2) %>% as.data.frame(responseName = "n_col_na")
14. ├─purrr::list_rbind(.)
15. │ └─purrr:::check_list_of_data_frames(x)
16. │ └─vctrs::obj_check_list(x, call = error_call)
17. ├─base::as.data.frame(., responseName = "n_col_na")
18. ├─crosstable:::as.data.frame.table(., responseName = "n_col_na")
19. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
20. │ ├─base::eval(ex)
21. │ │ └─base::eval(ex)
22. │ └─base::data.frame(...)
23. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
24. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
25. │ └─base::stop("row names contain missing values")
26. └─base::.handleSimpleError(...)
27. └─purrr (local) h(simpleError(msg, call))
28. └─cli::cli_abort(...)
29. └─rlang::abort(...)
── Error ('test-effects.R:79:3'): Effects: missing variables ───────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: x.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable(mtcars3, x, by = vs, effect = T) %>% ... at test-effects.R:79:3
2. ├─crosstable:::expect_warning2(., class = "crosstable_effect_warning")
3. │ └─testthat::expect_warning(object, ...) at ./helper-init_dataset.R:121:3
4. │ └─testthat:::expect_condition_matching_(...)
5. │ └─testthat:::quasi_capture(...)
6. │ ├─testthat (local) .capture(...)
7. │ │ └─base::withCallingHandlers(...)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. ├─crosstable::crosstable(mtcars3, x, by = vs, effect = T)
10. │ └─crosstable:::cross_by(...)
11. │ ├─... %>% list_rbind()
12. │ └─purrr::imap(...)
13. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
14. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
15. │ ├─purrr:::with_indexed_errors(...)
16. │ │ └─base::withCallingHandlers(...)
17. │ ├─purrr:::call_with_cleanup(...)
18. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
19. │ └─crosstable:::cross_categorical(...)
20. │ └─crosstable:::summarize_categorical_by(...)
21. │ └─marginSums(nn3, margin = 2) %>% as.data.frame(responseName = "n_col_na")
22. ├─purrr::list_rbind(.)
23. │ └─purrr:::check_list_of_data_frames(x)
24. │ └─vctrs::obj_check_list(x, call = error_call)
25. ├─base::as.data.frame(., responseName = "n_col_na")
26. ├─crosstable:::as.data.frame.table(., responseName = "n_col_na")
27. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
28. │ ├─base::eval(ex)
29. │ │ └─base::eval(ex)
30. │ └─base::data.frame(...)
31. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
32. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
33. │ └─base::stop("row names contain missing values")
34. └─base::.handleSimpleError(...)
35. └─purrr (local) h(simpleError(msg, call))
36. └─cli::cli_abort(...)
37. └─rlang::abort(...)
── Error ('test-effects.R:94:3'): Effects Warnings ─────────────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: cyl.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable(mtcars3, cyl, by = c(am, vs), effect = T) %>% ... at test-effects.R:94:3
2. ├─testthat::expect_warning(., class = "crosstable_multiby_effect_warning")
3. │ └─testthat:::expect_condition_matching_(...)
4. │ └─testthat:::quasi_capture(...)
5. │ ├─testthat (local) .capture(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
8. ├─crosstable::crosstable(mtcars3, cyl, by = c(am, vs), effect = T)
9. │ └─crosstable:::cross_by(...)
10. │ ├─... %>% list_rbind()
11. │ └─purrr::imap(...)
12. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
13. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
14. │ ├─purrr:::with_indexed_errors(...)
15. │ │ └─base::withCallingHandlers(...)
16. │ ├─purrr:::call_with_cleanup(...)
17. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
18. │ └─crosstable:::cross_categorical(...)
19. │ └─crosstable:::summarize_categorical_by(...)
20. │ └─marginSums(nn3, margin = 1) %>% as.data.frame(responseName = "n_row_na")
21. ├─purrr::list_rbind(.)
22. │ └─purrr:::check_list_of_data_frames(x)
23. │ └─vctrs::obj_check_list(x, call = error_call)
24. ├─base::as.data.frame(., responseName = "n_row_na")
25. ├─crosstable:::as.data.frame.table(., responseName = "n_row_na")
26. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
27. │ ├─base::eval(ex)
28. │ │ └─base::eval(ex)
29. │ └─base::data.frame(...)
30. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
31. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
32. │ └─base::stop("row names contain missing values")
33. └─base::.handleSimpleError(...)
34. └─purrr (local) h(simpleError(msg, call))
35. └─cli::cli_abort(...)
36. └─rlang::abort(...)
── Error ('test-flextable.R:2:1'): (code run outside of `test_that()`) ─────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 2.
i With name: am.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable::crosstable(mtcars3, c(mpg, am)) at test-flextable.R:2:1
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_single(...)
13. │ └─... %>% select(x = 1, n = 2)
14. ├─purrr::list_rbind(.)
15. │ └─purrr:::check_list_of_data_frames(x)
16. │ └─vctrs::obj_check_list(x, call = error_call)
17. ├─dplyr::select(., x = 1, n = 2)
18. ├─base::as.data.frame(.)
19. ├─crosstable:::as.data.frame.table(.)
20. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
21. │ ├─base::eval(ex)
22. │ │ └─base::eval(ex)
23. │ └─base::data.frame(...)
24. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
25. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
26. │ └─base::stop("row names contain missing values")
27. └─base::.handleSimpleError(...)
28. └─purrr (local) h(simpleError(msg, call))
29. └─cli::cli_abort(...)
30. └─rlang::abort(...)
── Error ('test-crosstable.R:6:3'): numeric+factor+surv by nothing ─────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: am.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable::crosstable(mtcars3, c(am, mpg, cyl, surv)) at test-crosstable.R:6:3
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_single(...)
13. │ └─... %>% select(x = 1, n = 2)
14. ├─purrr::list_rbind(.)
15. │ └─purrr:::check_list_of_data_frames(x)
16. │ └─vctrs::obj_check_list(x, call = error_call)
17. ├─dplyr::select(., x = 1, n = 2)
18. ├─base::as.data.frame(.)
19. ├─crosstable:::as.data.frame.table(.)
20. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
21. │ ├─base::eval(ex)
22. │ │ └─base::eval(ex)
23. │ └─base::data.frame(...)
24. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
25. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
26. │ └─base::stop("row names contain missing values")
27. └─base::.handleSimpleError(...)
28. └─purrr (local) h(simpleError(msg, call))
29. └─cli::cli_abort(...)
30. └─rlang::abort(...)
── Error ('test-crosstable.R:26:3'): Contains both `NA` and "NA" ───────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: a.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable(x, a) %>% pull(variable) %>% ... at test-crosstable.R:26:3
2. ├─testthat::expect_identical(., c("zzz", "aaa", "\"NA\"", "NA"))
3. │ └─testthat::quasi_label(enquo(object), label)
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─dplyr::pull(., variable)
6. ├─crosstable::crosstable(x, a)
7. │ └─crosstable:::cross_by(...)
8. │ ├─... %>% list_rbind()
9. │ └─purrr::imap(...)
10. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
11. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
12. │ ├─purrr:::with_indexed_errors(...)
13. │ │ └─base::withCallingHandlers(...)
14. │ ├─purrr:::call_with_cleanup(...)
15. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
16. │ └─crosstable:::cross_categorical(...)
17. │ └─crosstable:::summarize_categorical_single(...)
18. │ └─... %>% select(x = 1, n = 2)
19. ├─purrr::list_rbind(.)
20. │ └─purrr:::check_list_of_data_frames(x)
21. │ └─vctrs::obj_check_list(x, call = error_call)
22. ├─dplyr::select(., x = 1, n = 2)
23. ├─base::as.data.frame(.)
24. ├─crosstable:::as.data.frame.table(.)
25. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
26. │ ├─base::eval(ex)
27. │ │ └─base::eval(ex)
28. │ └─base::data.frame(...)
29. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
30. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
31. │ └─base::stop("row names contain missing values")
32. └─base::.handleSimpleError(...)
33. └─purrr (local) h(simpleError(msg, call))
34. └─cli::cli_abort(...)
35. └─rlang::abort(...)
── Error ('test-options.R:4:1'): (code run outside of `test_that()`) ───────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: x.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable::crosstable(t, cols = c("x")) at test-options.R:4:1
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_single(...)
13. │ └─... %>% select(x = 1, n = 2)
14. ├─purrr::list_rbind(.)
15. │ └─purrr:::check_list_of_data_frames(x)
16. │ └─vctrs::obj_check_list(x, call = error_call)
17. ├─dplyr::select(., x = 1, n = 2)
18. ├─base::as.data.frame(.)
19. ├─crosstable:::as.data.frame.table(.)
20. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
21. │ ├─base::eval(ex)
22. │ │ └─base::eval(ex)
23. │ └─base::data.frame(...)
24. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
25. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
26. │ └─base::stop("row names contain missing values")
27. └─base::.handleSimpleError(...)
28. └─purrr (local) h(simpleError(msg, call))
29. └─cli::cli_abort(...)
30. └─rlang::abort(...)
── Error ('test-pivot.R:5:1'): (code run outside of `test_that()`) ─────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: x.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─... %>% crosstable(-letter) at test-pivot.R:5:1
2. ├─crosstable::crosstable(., -letter)
3. │ └─crosstable:::cross_by(...)
4. │ ├─... %>% list_rbind()
5. │ └─purrr::imap(...)
6. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─crosstable:::cross_categorical(...)
13. │ └─crosstable:::summarize_categorical_single(...)
14. │ └─... %>% select(x = 1, n = 2)
15. ├─purrr::list_rbind(.)
16. │ └─purrr:::check_list_of_data_frames(x)
17. │ └─vctrs::obj_check_list(x, call = error_call)
18. ├─dplyr::select(., x = 1, n = 2)
19. ├─base::as.data.frame(.)
20. ├─crosstable:::as.data.frame.table(.)
21. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
22. │ ├─base::eval(ex)
23. │ │ └─base::eval(ex)
24. │ └─base::data.frame(...)
25. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
26. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
27. │ └─base::stop("row names contain missing values")
28. └─base::.handleSimpleError(...)
29. └─purrr (local) h(simpleError(msg, call))
30. └─cli::cli_abort(...)
31. └─rlang::abort(...)
── Error ('test-tests.R:11:5'): Statistical Tests ──────────────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: cyl.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable::crosstable(mtcars3, cyl, by = vs, test = T) at test-tests.R:11:5
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_by(...)
13. │ └─marginSums(nn3, margin = 1) %>% as.data.frame(responseName = "n_row_na")
14. ├─purrr::list_rbind(.)
15. │ └─purrr:::check_list_of_data_frames(x)
16. │ └─vctrs::obj_check_list(x, call = error_call)
17. ├─base::as.data.frame(., responseName = "n_row_na")
18. ├─crosstable:::as.data.frame.table(., responseName = "n_row_na")
19. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
20. │ ├─base::eval(ex)
21. │ │ └─base::eval(ex)
22. │ └─base::data.frame(...)
23. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
24. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
25. │ └─base::stop("row names contain missing values")
26. └─base::.handleSimpleError(...)
27. └─purrr (local) h(simpleError(msg, call))
28. └─cli::cli_abort(...)
29. └─rlang::abort(...)
── Error ('test-tests.R:98:5'): 'Test' can be a variable name ──────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: test.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable::crosstable(mtcars3, test, by = vs, test = TRUE) at test-tests.R:98:5
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_by(...)
13. │ └─marginSums(nn3, margin = 2) %>% as.data.frame(responseName = "n_col_na")
14. ├─purrr::list_rbind(.)
15. │ └─purrr:::check_list_of_data_frames(x)
16. │ └─vctrs::obj_check_list(x, call = error_call)
17. ├─base::as.data.frame(., responseName = "n_col_na")
18. ├─crosstable:::as.data.frame.table(., responseName = "n_col_na")
19. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
20. │ ├─base::eval(ex)
21. │ │ └─base::eval(ex)
22. │ └─base::data.frame(...)
23. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
24. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
25. │ └─base::stop("row names contain missing values")
26. └─base::.handleSimpleError(...)
27. └─purrr (local) h(simpleError(msg, call))
28. └─cli::cli_abort(...)
29. └─rlang::abort(...)
── Error ('test-tests.R:106:5'): Testing everything ────────────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 3.
i With name: am.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable::crosstable(...) at test-tests.R:106:5
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_by(...)
13. │ └─marginSums(nn3, margin = 2) %>% as.data.frame(responseName = "n_col_na")
14. ├─purrr::list_rbind(.)
15. │ └─purrr:::check_list_of_data_frames(x)
16. │ └─vctrs::obj_check_list(x, call = error_call)
17. ├─base::as.data.frame(., responseName = "n_col_na")
18. ├─crosstable:::as.data.frame.table(., responseName = "n_col_na")
19. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
20. │ ├─base::eval(ex)
21. │ │ └─base::eval(ex)
22. │ └─base::data.frame(...)
23. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
24. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
25. │ └─base::stop("row names contain missing values")
26. └─base::.handleSimpleError(...)
27. └─purrr (local) h(simpleError(msg, call))
28. └─cli::cli_abort(...)
29. └─rlang::abort(...)
── Error ('test-selection.R:7:3'): crosstable whole table ──────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 5.
i With name: Species.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable:::expect_cross(...) at test-selection.R:7:3
2. │ └─testthat::expect_s3_class(x, c("data.frame", "crosstable")) at ./helper-init_dataset.R:81:3
3. │ └─testthat::quasi_label(enquo(object))
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─crosstable::crosstable(iris2)
6. │ └─crosstable:::cross_by(...)
7. │ ├─... %>% list_rbind()
8. │ └─purrr::imap(...)
9. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
10. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
11. │ ├─purrr:::with_indexed_errors(...)
12. │ │ └─base::withCallingHandlers(...)
13. │ ├─purrr:::call_with_cleanup(...)
14. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
15. │ └─crosstable:::cross_categorical(...)
16. │ └─crosstable:::summarize_categorical_single(...)
17. │ └─... %>% select(x = 1, n = 2)
18. ├─purrr::list_rbind(.)
19. │ └─purrr:::check_list_of_data_frames(x)
20. │ └─vctrs::obj_check_list(x, call = error_call)
21. ├─dplyr::select(., x = 1, n = 2)
22. ├─base::as.data.frame(.)
23. ├─crosstable:::as.data.frame.table(.)
24. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
25. │ ├─base::eval(ex)
26. │ │ └─base::eval(ex)
27. │ └─base::data.frame(...)
28. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
29. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
30. │ └─base::stop("row names contain missing values")
31. └─base::.handleSimpleError(...)
32. └─purrr (local) h(simpleError(msg, call))
33. └─cli::cli_abort(...)
34. └─rlang::abort(...)
── Error ('test-selection.R:80:3'): crosstable with tidyselect helpers ─────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 5.
i With name: Species.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable:::expect_cross(...) at test-selection.R:80:3
2. │ └─testthat::expect_s3_class(x, c("data.frame", "crosstable")) at ./helper-init_dataset.R:81:3
3. │ └─testthat::quasi_label(enquo(object))
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─crosstable::crosstable(iris2, everything())
6. │ └─crosstable:::cross_by(...)
7. │ ├─... %>% list_rbind()
8. │ └─purrr::imap(...)
9. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
10. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
11. │ ├─purrr:::with_indexed_errors(...)
12. │ │ └─base::withCallingHandlers(...)
13. │ ├─purrr:::call_with_cleanup(...)
14. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
15. │ └─crosstable:::cross_categorical(...)
16. │ └─crosstable:::summarize_categorical_single(...)
17. │ └─... %>% select(x = 1, n = 2)
18. ├─purrr::list_rbind(.)
19. │ └─purrr:::check_list_of_data_frames(x)
20. │ └─vctrs::obj_check_list(x, call = error_call)
21. ├─dplyr::select(., x = 1, n = 2)
22. ├─base::as.data.frame(.)
23. ├─crosstable:::as.data.frame.table(.)
24. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
25. │ ├─base::eval(ex)
26. │ │ └─base::eval(ex)
27. │ └─base::data.frame(...)
28. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
29. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
30. │ └─base::stop("row names contain missing values")
31. └─base::.handleSimpleError(...)
32. └─purrr (local) h(simpleError(msg, call))
33. └─cli::cli_abort(...)
34. └─rlang::abort(...)
── Error ('test-selection.R:179:3'): crosstable with formula ───────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 5.
i With name: Species.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable:::expect_cross(...) at test-selection.R:179:3
2. │ └─testthat::expect_s3_class(x, c("data.frame", "crosstable")) at ./helper-init_dataset.R:81:3
3. │ └─testthat::quasi_label(enquo(object))
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─crosstable::crosstable(iris2, everything())
6. │ └─crosstable:::cross_by(...)
7. │ ├─... %>% list_rbind()
8. │ └─purrr::imap(...)
9. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
10. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
11. │ ├─purrr:::with_indexed_errors(...)
12. │ │ └─base::withCallingHandlers(...)
13. │ ├─purrr:::call_with_cleanup(...)
14. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
15. │ └─crosstable:::cross_categorical(...)
16. │ └─crosstable:::summarize_categorical_single(...)
17. │ └─... %>% select(x = 1, n = 2)
18. ├─purrr::list_rbind(.)
19. │ └─purrr:::check_list_of_data_frames(x)
20. │ └─vctrs::obj_check_list(x, call = error_call)
21. ├─dplyr::select(., x = 1, n = 2)
22. ├─base::as.data.frame(.)
23. ├─crosstable:::as.data.frame.table(.)
24. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
25. │ ├─base::eval(ex)
26. │ │ └─base::eval(ex)
27. │ └─base::data.frame(...)
28. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
29. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
30. │ └─base::stop("row names contain missing values")
31. └─base::.handleSimpleError(...)
32. └─purrr (local) h(simpleError(msg, call))
33. └─cli::cli_abort(...)
34. └─rlang::abort(...)
── Error ('test-selection.R:214:3'): crosstable ultimate selection ─────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 5.
i With name: Species.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─crosstable:::expect_cross(...) at test-selection.R:214:3
2. │ └─testthat::expect_s3_class(x, c("data.frame", "crosstable")) at ./helper-init_dataset.R:81:3
3. │ └─testthat::quasi_label(enquo(object))
4. │ └─rlang::eval_bare(expr, quo_get_env(quo))
5. ├─crosstable::crosstable(iris2, everything())
6. │ └─crosstable:::cross_by(...)
7. │ ├─... %>% list_rbind()
8. │ └─purrr::imap(...)
9. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
10. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
11. │ ├─purrr:::with_indexed_errors(...)
12. │ │ └─base::withCallingHandlers(...)
13. │ ├─purrr:::call_with_cleanup(...)
14. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
15. │ └─crosstable:::cross_categorical(...)
16. │ └─crosstable:::summarize_categorical_single(...)
17. │ └─... %>% select(x = 1, n = 2)
18. ├─purrr::list_rbind(.)
19. │ └─purrr:::check_list_of_data_frames(x)
20. │ └─vctrs::obj_check_list(x, call = error_call)
21. ├─dplyr::select(., x = 1, n = 2)
22. ├─base::as.data.frame(.)
23. ├─crosstable:::as.data.frame.table(.)
24. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
25. │ ├─base::eval(ex)
26. │ │ └─base::eval(ex)
27. │ └─base::data.frame(...)
28. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
29. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
30. │ └─base::stop("row names contain missing values")
31. └─base::.handleSimpleError(...)
32. └─purrr (local) h(simpleError(msg, call))
33. └─cli::cli_abort(...)
34. └─rlang::abort(...)
── Error ('test-selection.R:239:3'): crosstable limit tests: warnings ──────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 2.
i With name: Species.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─testthat::expect_warning(crosstable(x, c(xx, Species)), class = "crosstable_wrong_col_class_warning") at test-selection.R:239:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─crosstable::crosstable(x, c(xx, Species))
8. │ └─crosstable:::cross_by(...)
9. │ ├─... %>% list_rbind()
10. │ └─purrr::imap(...)
11. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
12. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
13. │ ├─purrr:::with_indexed_errors(...)
14. │ │ └─base::withCallingHandlers(...)
15. │ ├─purrr:::call_with_cleanup(...)
16. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
17. │ └─crosstable:::cross_categorical(...)
18. │ └─crosstable:::summarize_categorical_single(...)
19. │ └─... %>% select(x = 1, n = 2)
20. ├─purrr::list_rbind(.)
21. │ └─purrr:::check_list_of_data_frames(x)
22. │ └─vctrs::obj_check_list(x, call = error_call)
23. ├─dplyr::select(., x = 1, n = 2)
24. ├─base::as.data.frame(.)
25. ├─crosstable:::as.data.frame.table(.)
26. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
27. │ ├─base::eval(ex)
28. │ │ └─base::eval(ex)
29. │ └─base::data.frame(...)
30. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
31. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
32. │ └─base::stop("row names contain missing values")
33. └─base::.handleSimpleError(...)
34. └─purrr (local) h(simpleError(msg, call))
35. └─cli::cli_abort(...)
36. └─rlang::abort(...)
── Error ('test-selection.R:245:3'): crosstable limit tests: deprecated features ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, vec_index(.x), .f, ...)`: i In index: 1.
i With name: am.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
Backtrace:
▆
1. ├─... %>% invisible()
2. ├─crosstable::crosstable(...)
3. │ └─crosstable:::cross_by(...)
4. │ ├─... %>% list_rbind()
5. │ └─purrr::imap(...)
6. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─crosstable:::cross_categorical(...)
13. │ └─crosstable:::summarize_categorical_single(...)
14. │ └─... %>% select(x = 1, n = 2)
15. ├─purrr::list_rbind(.)
16. │ └─purrr:::check_list_of_data_frames(x)
17. │ └─vctrs::obj_check_list(x, call = error_call)
18. ├─dplyr::select(., x = 1, n = 2)
19. ├─base::as.data.frame(.)
20. ├─crosstable:::as.data.frame.table(.)
21. │ └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
22. │ ├─base::eval(ex)
23. │ │ └─base::eval(ex)
24. │ └─base::data.frame(...)
25. │ ├─base::as.data.frame(x[[i]], optional = TRUE)
26. │ └─base::as.data.frame.integer(x[[i]], optional = TRUE)
27. │ └─base::stop("row names contain missing values")
28. └─base::.handleSimpleError(...)
29. └─purrr (local) h(simpleError(msg, call))
30. └─cli::cli_abort(...)
31. └─rlang::abort(...)
[ FAIL 34 | WARN 0 | SKIP 19 | PASS 223 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.9.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'crosstable-report.Rmd' using rmarkdown
Quitting from crosstable-report.Rmd:54-95 [officer]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `map2()`:
ℹ In index: 2.
ℹ With name: cyl.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
---
Backtrace:
▆
1. ├─crosstable::crosstable(...)
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_by(...)
13. │ └─crosstable:::summarize_categorical_single(...)
14. │ └─... %>% select(x = 1, n = 2)
15. ├─purrr::list_rbind(.)
16. │ └─purrr:::check_list_of_data_frames(x)
17. │ └─vctrs::obj_check_list(x, call = error_call)
18. ├─dplyr::select(., x = 1, n = 2)
19. ├─base::as.data.frame(.)
20. └─crosstable:::as.data.frame.table(.)
21. └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
22. ├─base::eval(ex)
23. │ └─base::eval(ex)
24. └─base::data.frame(...)
25. ├─base::as.data.frame(x[[i]], optional = TRUE)
26. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
27. └─base::stop("row names contain missing values")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'crosstable-report.Rmd' failed with diagnostics:
ℹ In index: 2.
ℹ With name: cyl.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
--- failed re-building 'crosstable-report.Rmd'
--- re-building 'crosstable-selection.Rmd' using rmarkdown
Quitting from crosstable-selection.Rmd:34-39 [crosstable-bare]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `map2()`:
ℹ In index: 5.
ℹ With name: Species.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
---
Backtrace:
▆
1. ├─crosstable::crosstable(iris2, everything())
2. │ └─crosstable:::cross_by(...)
3. │ ├─... %>% list_rbind()
4. │ └─purrr::imap(...)
5. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
6. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
7. │ ├─purrr:::with_indexed_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ ├─purrr:::call_with_cleanup(...)
10. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
11. │ └─crosstable:::cross_categorical(...)
12. │ └─crosstable:::summarize_categorical_single(...)
13. │ └─... %>% select(x = 1, n = 2)
14. ├─purrr::list_rbind(.)
15. │ └─purrr:::check_list_of_data_frames(x)
16. │ └─vctrs::obj_check_list(x, call = error_call)
17. ├─dplyr::select(., x = 1, n = 2)
18. ├─base::as.data.frame(.)
19. └─crosstable:::as.data.frame.table(.)
20. └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
21. ├─base::eval(ex)
22. │ └─base::eval(ex)
23. └─base::data.frame(...)
24. ├─base::as.data.frame(x[[i]], optional = TRUE)
25. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
26. └─base::stop("row names contain missing values")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'crosstable-selection.Rmd' failed with diagnostics:
ℹ In index: 5.
ℹ With name: Species.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
--- failed re-building 'crosstable-selection.Rmd'
--- re-building 'crosstable.Rmd' using rmarkdown
Quitting from crosstable.Rmd:122-126 [crosstable-total-both]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `map2()`:
ℹ In index: 1.
ℹ With name: am.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
---
Backtrace:
▆
1. ├─... %>% as_flextable(keep_id = TRUE)
2. ├─flextable::as_flextable(., keep_id = TRUE)
3. ├─crosstable::crosstable(mtcars2, c(am, mpg), by = vs, total = "both")
4. │ └─crosstable:::cross_by(...)
5. │ ├─... %>% list_rbind()
6. │ └─purrr::imap(...)
7. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
8. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
13. │ └─crosstable:::cross_categorical(...)
14. │ └─crosstable:::summarize_categorical_by(...)
15. │ └─crosstable:::summarize_categorical_single(...)
16. │ └─... %>% select(x = 1, n = 2)
17. ├─purrr::list_rbind(.)
18. │ └─purrr:::check_list_of_data_frames(x)
19. │ └─vctrs::obj_check_list(x, call = error_call)
20. ├─dplyr::select(., x = 1, n = 2)
21. ├─base::as.data.frame(.)
22. └─crosstable:::as.data.frame.table(.)
23. └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
24. ├─base::eval(ex)
25. │ └─base::eval(ex)
26. └─base::data.frame(...)
27. ├─base::as.data.frame(x[[i]], optional = TRUE)
28. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
29. └─base::stop("row names contain missing values")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'crosstable.Rmd' failed with diagnostics:
ℹ In index: 1.
ℹ With name: am.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
--- failed re-building 'crosstable.Rmd'
--- re-building 'customization.Rmd' using rmarkdown
--- finished re-building 'customization.Rmd'
--- re-building 'percent_pattern.Rmd' using rmarkdown
Quitting from percent_pattern.Rmd:47-49 [Default behaviour]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `map2()`:
ℹ In index: 1.
ℹ With name: cyl.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
---
Backtrace:
▆
1. ├─crosstable(mtcars3, cyl, by = vs) %>% as_flextable()
2. ├─flextable::as_flextable(.)
3. ├─crosstable::crosstable(mtcars3, cyl, by = vs)
4. │ └─crosstable:::cross_by(...)
5. │ ├─... %>% list_rbind()
6. │ └─purrr::imap(...)
7. │ └─purrr::map2(.x, vec_index(.x), .f, ...)
8. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─crosstable (local) .f(.x[[i]], .y[[i]], ...)
13. │ └─crosstable:::cross_categorical(...)
14. │ └─crosstable:::summarize_categorical_by(...)
15. │ └─marginSums(nn3, margin = 1) %>% as.data.frame(responseName = "n_row_na")
16. ├─purrr::list_rbind(.)
17. │ └─purrr:::check_list_of_data_frames(x)
18. │ └─vctrs::obj_check_list(x, call = error_call)
19. ├─base::as.data.frame(., responseName = "n_row_na")
20. └─crosstable:::as.data.frame.table(., responseName = "n_row_na")
21. └─base::as.data.frame.table(..., stringsAsFactors = FALSE)
22. ├─base::eval(ex)
23. │ └─base::eval(ex)
24. └─base::data.frame(...)
25. ├─base::as.data.frame(x[[i]], optional = TRUE)
26. └─base::as.data.frame.integer(x[[i]], optional = TRUE)
27. └─base::stop("row names contain missing values")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'percent_pattern.Rmd' failed with diagnostics:
ℹ In index: 1.
ℹ With name: cyl.
Caused by error in `as.data.frame.integer()`:
! row names contain missing values
--- failed re-building 'percent_pattern.Rmd'
SUMMARY: processing the following files failed:
'crosstable-report.Rmd' 'crosstable-selection.Rmd' 'crosstable.Rmd'
'percent_pattern.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64