Last updated on 2025-12-21 17:51:06 CET.
| Package | ERROR | OK |
|---|---|---|
| mda.biber | 13 | |
| pseudobibeR | 3 | 10 |
| spell.replacer | 13 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 3, OK: 10
Version: 1.2
Check: examples
Result: ERROR
Running examples in ‘pseudobibeR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: biber
> ### Title: Extract Biber features from a document parsed and annotated by
> ### spacyr or udpipe
> ### Aliases: biber biber.spacyr_parsed biber.udpipe_connlu
>
> ### ** Examples
>
> # Parse the example documents provided with the package
> biber(udpipe_samples)
Error in `[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), :
attempt access index 5/5 in VECTOR_ELT
Calls: biber ... as.data.frame.udpipe_connlu -> read_connlu -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(pseudobibeR)
>
> test_check("pseudobibeR")
Saving _problems/test-features-6.R
Saving _problems/test-snapshot-13.R
Saving _problems/test-snapshot-19.R
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 2 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-features.R:6:1'): (code run outside of `test_that()`) ──────────
Error in ``[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id))`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressMessages(biber(udp, measure = "TTR", normalize = FALSE)) at test-features.R:6:1
2. │ └─base::withCallingHandlers(...)
3. ├─pseudobibeR::biber(udp, measure = "TTR", normalize = FALSE)
4. └─pseudobibeR:::biber.udpipe_connlu(udp, measure = "TTR", normalize = FALSE)
5. ├─base::as.data.frame(tokens, stringsAsFactors = FALSE)
6. └─udpipe:::as.data.frame.udpipe_connlu(tokens, stringsAsFactors = FALSE)
7. └─udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)
8. ├─out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]
9. └─data.table:::`[.data.table`(...)
── Error ('test-snapshot.R:12:3'): counts are unchanged ────────────────────────
Error in ``[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id))`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_snapshot_value(...) at test-snapshot.R:12:3
2. │ ├─testthat:::with_is_snapshotting(force(x))
3. │ └─base::force(x)
4. ├─base::suppressMessages(biber(udp, measure = "TTR", normalize = FALSE))
5. │ └─base::withCallingHandlers(...)
6. ├─pseudobibeR::biber(udp, measure = "TTR", normalize = FALSE)
7. └─pseudobibeR:::biber.udpipe_connlu(udp, measure = "TTR", normalize = FALSE)
8. ├─base::as.data.frame(tokens, stringsAsFactors = FALSE)
9. └─udpipe:::as.data.frame.udpipe_connlu(tokens, stringsAsFactors = FALSE)
10. └─udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)
11. ├─out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]
12. └─data.table:::`[.data.table`(...)
── Error ('test-snapshot.R:19:3'): normalized output is unchanged ──────────────
Error in ``[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id))`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_snapshot_value(...) at test-snapshot.R:19:3
2. │ ├─testthat:::with_is_snapshotting(force(x))
3. │ └─base::force(x)
4. ├─base::suppressMessages(biber(udp, measure = "TTR"))
5. │ └─base::withCallingHandlers(...)
6. ├─pseudobibeR::biber(udp, measure = "TTR")
7. └─pseudobibeR:::biber.udpipe_connlu(udp, measure = "TTR")
8. ├─base::as.data.frame(tokens, stringsAsFactors = FALSE)
9. └─udpipe:::as.data.frame.udpipe_connlu(tokens, stringsAsFactors = FALSE)
10. └─udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)
11. ├─out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]
12. └─data.table:::`[.data.table`(...)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 2 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(pseudobibeR)
>
> test_check("pseudobibeR")
Saving _problems/test-features-6.R
Saving _problems/test-snapshot-13.R
Saving _problems/test-snapshot-19.R
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 2 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-features.R:6:1'): (code run outside of `test_that()`) ──────────
Error in ``[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id))`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressMessages(biber(udp, measure = "TTR", normalize = FALSE)) at test-features.R:6:1
2. │ └─base::withCallingHandlers(...)
3. ├─pseudobibeR::biber(udp, measure = "TTR", normalize = FALSE)
4. └─pseudobibeR:::biber.udpipe_connlu(udp, measure = "TTR", normalize = FALSE)
5. ├─base::as.data.frame(tokens, stringsAsFactors = FALSE)
6. └─udpipe:::as.data.frame.udpipe_connlu(tokens, stringsAsFactors = FALSE)
7. └─udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)
8. ├─out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]
9. └─data.table:::`[.data.table`(...)
── Error ('test-snapshot.R:12:3'): counts are unchanged ────────────────────────
Error in ``[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id))`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_snapshot_value(...) at test-snapshot.R:12:3
2. │ ├─testthat:::with_is_snapshotting(force(x))
3. │ └─base::force(x)
4. ├─base::suppressMessages(biber(udp, measure = "TTR", normalize = FALSE))
5. │ └─base::withCallingHandlers(...)
6. ├─pseudobibeR::biber(udp, measure = "TTR", normalize = FALSE)
7. └─pseudobibeR:::biber.udpipe_connlu(udp, measure = "TTR", normalize = FALSE)
8. ├─base::as.data.frame(tokens, stringsAsFactors = FALSE)
9. └─udpipe:::as.data.frame.udpipe_connlu(tokens, stringsAsFactors = FALSE)
10. └─udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)
11. ├─out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]
12. └─data.table:::`[.data.table`(...)
── Error ('test-snapshot.R:19:3'): normalized output is unchanged ──────────────
Error in ``[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id))`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_snapshot_value(...) at test-snapshot.R:19:3
2. │ ├─testthat:::with_is_snapshotting(force(x))
3. │ └─base::force(x)
4. ├─base::suppressMessages(biber(udp, measure = "TTR"))
5. │ └─base::withCallingHandlers(...)
6. ├─pseudobibeR::biber(udp, measure = "TTR")
7. └─pseudobibeR:::biber.udpipe_connlu(udp, measure = "TTR")
8. ├─base::as.data.frame(tokens, stringsAsFactors = FALSE)
9. └─udpipe:::as.data.frame.udpipe_connlu(tokens, stringsAsFactors = FALSE)
10. └─udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)
11. ├─out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]
12. └─data.table:::`[.data.table`(...)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 2 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2
Check: examples
Result: ERROR
Running examples in ‘pseudobibeR-Ex.R’ failed
The error most likely occurred in:
> ### Name: biber
> ### Title: Extract Biber features from a document parsed and annotated by
> ### spacyr or udpipe
> ### Aliases: biber biber.spacyr_parsed biber.udpipe_connlu
>
> ### ** Examples
>
> # Parse the example documents provided with the package
> biber(udpipe_samples)
Error in `[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), :
attempt access index 5/5 in VECTOR_ELT
Calls: biber ... as.data.frame.udpipe_connlu -> read_connlu -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(pseudobibeR)
>
> test_check("pseudobibeR")
Saving _problems/test-features-6.R
Saving _problems/test-snapshot-13.R
Saving _problems/test-snapshot-19.R
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 2 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-features.R:6:1'): (code run outside of `test_that()`) ──────────
Error in ``[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id))`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressMessages(biber(udp, measure = "TTR", normalize = FALSE)) at test-features.R:6:1
2. │ └─base::withCallingHandlers(...)
3. ├─pseudobibeR::biber(udp, measure = "TTR", normalize = FALSE)
4. └─pseudobibeR:::biber.udpipe_connlu(udp, measure = "TTR", normalize = FALSE)
5. ├─base::as.data.frame(tokens, stringsAsFactors = FALSE)
6. └─udpipe:::as.data.frame.udpipe_connlu(tokens, stringsAsFactors = FALSE)
7. └─udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)
8. ├─out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]
9. └─data.table:::`[.data.table`(...)
── Error ('test-snapshot.R:12:3'): counts are unchanged ────────────────────────
Error in ``[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id))`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_snapshot_value(...) at test-snapshot.R:12:3
2. │ ├─testthat:::with_is_snapshotting(force(x))
3. │ └─base::force(x)
4. ├─base::suppressMessages(biber(udp, measure = "TTR", normalize = FALSE))
5. │ └─base::withCallingHandlers(...)
6. ├─pseudobibeR::biber(udp, measure = "TTR", normalize = FALSE)
7. └─pseudobibeR:::biber.udpipe_connlu(udp, measure = "TTR", normalize = FALSE)
8. ├─base::as.data.frame(tokens, stringsAsFactors = FALSE)
9. └─udpipe:::as.data.frame.udpipe_connlu(tokens, stringsAsFactors = FALSE)
10. └─udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)
11. ├─out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]
12. └─data.table:::`[.data.table`(...)
── Error ('test-snapshot.R:19:3'): normalized output is unchanged ──────────────
Error in ``[.data.table`(out, , `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id))`: attempt access index 5/5 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_snapshot_value(...) at test-snapshot.R:19:3
2. │ ├─testthat:::with_is_snapshotting(force(x))
3. │ └─base::force(x)
4. ├─base::suppressMessages(biber(udp, measure = "TTR"))
5. │ └─base::withCallingHandlers(...)
6. ├─pseudobibeR::biber(udp, measure = "TTR")
7. └─pseudobibeR:::biber.udpipe_connlu(udp, measure = "TTR")
8. ├─base::as.data.frame(tokens, stringsAsFactors = FALSE)
9. └─udpipe:::as.data.frame.udpipe_connlu(tokens, stringsAsFactors = FALSE)
10. └─udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)
11. ├─out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]
12. └─data.table:::`[.data.table`(...)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 2 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: OK: 13