CRAN Package Check Results for Maintainer ‘Eleanor Pullenayegum <eleanor.pullenayegum at sickkids.ca>’

Last updated on 2025-12-21 11:50:29 CET.

Package	ERROR	OK
IrregLong	4	9

Package IrregLong

Current CRAN status: ERROR: 4, OK: 9

Version: 0.4.0
Check: examples
Result: ERROR Running examples in ‘IrregLong-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: iiw > ### Title: Given a proportional hazards model for visit intensities, > ### compute inverse-intensity weights. > ### Aliases: iiw > > ### ** Examples > > library(nlme) > library(survival) > library(geeM) Loading required package: Matrix > library(data.table) Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% > data(Phenobarb) > Phenobarb$event <- 1-as.numeric(is.na(Phenobarb$conc)) > data <- Phenobarb > data <- data[data$event==1,] > data$id <- as.numeric(data$Subject) > data <- data[data$time<16*24,] > data <- lagfn(data, lagvars=c("time","conc"), id="Subject", time="time", lagfirst = NA) Error in `[.data.table`(dt, , `:=`((lagged.names)[col], shift(.SD, fill = lagfirst[col])), : attempt access index 9/9 in VECTOR_ELT Calls: lagfn -> [ -> [.data.table Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Irreglong-vignette.Rmd’ using rmarkdown Quitting from Irreglong-vignette.Rmd:87-94 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 9/9 in VECTOR_ELT --- Backtrace: ▆ 1. └─IrregLong::extent.of.irregularity(...) 2. └─base::lapply(...) 3. └─IrregLong (local) FUN(X[[i]], ...) 4. └─IrregLong::lagfn(datacox, lagvars, id, time) 5. ├─...[] 6. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Irreglong-vignette.Rmd' failed with diagnostics: attempt access index 9/9 in VECTOR_ELT --- failed re-building ‘Irreglong-vignette.Rmd’ SUMMARY: processing the following file failed: ‘Irreglong-vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.4.0
Check: examples
Result: ERROR Running examples in ‘IrregLong-Ex.R’ failed The error most likely occurred in: > ### Name: iiw > ### Title: Given a proportional hazards model for visit intensities, > ### compute inverse-intensity weights. > ### Aliases: iiw > > ### ** Examples > > library(nlme) > library(survival) > library(geeM) Loading required package: Matrix > library(data.table) Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% > data(Phenobarb) > Phenobarb$event <- 1-as.numeric(is.na(Phenobarb$conc)) > data <- Phenobarb > data <- data[data$event==1,] > data$id <- as.numeric(data$Subject) > data <- data[data$time<16*24,] > data <- lagfn(data, lagvars=c("time","conc"), id="Subject", time="time", lagfirst = NA) Error in `[.data.table`(dt, , `:=`((lagged.names)[col], shift(.SD, fill = lagfirst[col])), : attempt access index 9/9 in VECTOR_ELT Calls: lagfn -> [ -> [.data.table Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Irreglong-vignette.Rmd’ using rmarkdown Quitting from Irreglong-vignette.Rmd:87-94 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 9/9 in VECTOR_ELT --- Backtrace: ▆ 1. └─IrregLong::extent.of.irregularity(...) 2. └─base::lapply(...) 3. └─IrregLong (local) FUN(X[[i]], ...) 4. └─IrregLong::lagfn(datacox, lagvars, id, time) 5. ├─...[] 6. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Irreglong-vignette.Rmd' failed with diagnostics: attempt access index 9/9 in VECTOR_ELT --- failed re-building ‘Irreglong-vignette.Rmd’ SUMMARY: processing the following file failed: ‘Irreglong-vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc