Last updated on 2026-11-10 17:52:39 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 4.13 | 116.63 | 120.76 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 3.26 | 86.19 | 89.45 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | OK | ||||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 95.64 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 8.00 | 158.00 | 166.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | OK | ||||
| r-release-linux-x86_64 | 1.0.0 | 3.98 | 118.21 | 122.19 | OK | |
| r-release-macos-arm64 | 1.0.0 | 1.00 | 40.00 | 41.00 | OK | |
| r-release-macos-x86_64 | 1.0.0 | 3.00 | 138.00 | 141.00 | OK | |
| r-release-windows-x86_64 | 1.0.0 | 7.00 | 142.00 | 149.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.0 | 3.00 | 162.00 | 165.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.0 | 9.00 | 182.00 | 191.00 | OK |
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘birthdeath_deeptime.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘birthdeath_deeptime.Rmd’
--- re-building ‘birthdeath_phylogenies.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘birthdeath_phylogenies.Rmd’
--- re-building ‘deeptime_clocks.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘deeptime_clocks.Rmd’
--- re-building ‘deeptime_rocks.Rmd’ using rmarkdown
Quitting from deeptime_rocks.Rmd:37-40 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'paleobioDB'
---
Backtrace:
▆
1. └─base::library(paleobioDB)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'deeptime_rocks.Rmd' failed with diagnostics:
there is no package called 'paleobioDB'
--- failed re-building ‘deeptime_rocks.Rmd’
--- re-building ‘intro_R.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘intro_R.Rmd’
--- re-building ‘phylogenies_and_diversification.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘phylogenies_and_diversification.Rmd’
--- re-building ‘popgen_drift.Rmd’ using rmarkdown
Warning: The chunk 'unnamed-chunk-8' opened new graphics device(s) (e.g., via dev.new()), from which knitr cannot capture plots. Please remove the code that opens new devices such as dev.new().
Warning: The chunk 'unnamed-chunk-11' opened new graphics device(s) (e.g., via dev.new()), from which knitr cannot capture plots. Please remove the code that opens new devices such as dev.new().
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘popgen_drift.Rmd’
--- re-building ‘popgen_intro.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘popgen_intro.Rmd’
--- re-building ‘popgen_selection.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘popgen_selection.Rmd’
--- re-building ‘population_genetics.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘population_genetics.Rmd’
--- re-building ‘rocks_and_clocks.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘rocks_and_clocks.Rmd’
SUMMARY: processing the following file failed:
‘deeptime_rocks.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc