Last updated on 2026-03-03 17:51:02 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7-38 | 133.83 | 241.21 | 375.04 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.7-38 | 88.37 | 169.14 | 257.51 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.7-38 | 199.00 | 415.81 | 614.81 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.7-38 | 238.00 | 411.25 | 649.25 | OK | |
| r-devel-macos-arm64 | 0.7-38 | 30.00 | 57.00 | 87.00 | OK | |
| r-devel-windows-x86_64 | 0.7-38 | 154.00 | 279.00 | 433.00 | OK | |
| r-patched-linux-x86_64 | 0.7-38 | 116.00 | 238.34 | 354.34 | OK | |
| r-release-linux-x86_64 | 0.7-38 | 104.37 | 239.54 | 343.91 | OK | |
| r-release-macos-arm64 | 0.7-38 | 27.00 | 58.00 | 85.00 | OK | |
| r-release-macos-x86_64 | 0.7-38 | 91.00 | 461.00 | 552.00 | OK | |
| r-release-windows-x86_64 | 0.7-38 | 135.00 | 269.00 | 404.00 | OK | |
| r-oldrel-macos-arm64 | 0.7-38 | 27.00 | 64.00 | 91.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.7-38 | 90.00 | 437.00 | 527.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.7-38 | 175.00 | 772.00 | 947.00 | WARN |
Version: 0.7-38
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘relationship.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘relationship.Rmd’
--- re-building ‘single_cell_rnaseq_basic.Rmd’ using rmarkdown
trying URL 'https://stephenslab.github.io/fastTopics/pbmc_facs.RData'
Quitting from single_cell_rnaseq_basic.Rmd:275-281 [de-analysis-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://stephenslab.github.io/fastTopics/pbmc_facs.RData'
---
Backtrace:
▆
1. └─utils::download.file(pbmc_facs_url, pbmc_facs_file)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'single_cell_rnaseq_basic.Rmd' failed with diagnostics:
cannot open URL 'https://stephenslab.github.io/fastTopics/pbmc_facs.RData'
--- failed re-building ‘single_cell_rnaseq_basic.Rmd’
--- re-building ‘topics_vs_clusters.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘topics_vs_clusters.Rmd’
SUMMARY: processing the following file failed:
‘single_cell_rnaseq_basic.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.7-38
Check: installed package size
Result: NOTE
installed size is 14.3Mb
sub-directories of 1Mb or more:
data 7.2Mb
doc 1.9Mb
libs 4.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.7-38
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.7-38
Check: for unstated dependencies in ‘tests’
Result: WARN
Warning: unable to access index for repository https://bioconductor.org/packages/3.20/data/annotation/src/contrib:
cannot open URL 'https://bioconductor.org/packages/3.20/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.20/data/experiment/src/contrib:
cannot open URL 'https://bioconductor.org/packages/3.20/data/experiment/src/contrib/PACKAGES'
Flavor: r-oldrel-windows-x86_64