Last updated on 2026-05-24 23:49:14 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.3 | 68.52 | 200.06 | 268.58 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.3 | 91.43 | 141.55 | 232.98 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.3 | 101.00 | 330.02 | 431.02 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.3 | 156.00 | 350.15 | 506.15 | OK | |
| r-devel-windows-x86_64 | 2.0.3 | 96.00 | 228.00 | 324.00 | OK | |
| r-patched-linux-x86_64 | 2.0.3 | 63.59 | 189.07 | 252.66 | OK | |
| r-release-linux-x86_64 | 2.0.3 | 121.85 | 192.38 | 314.23 | OK | |
| r-release-macos-arm64 | 2.0.3 | 16.00 | 70.00 | 86.00 | OK | |
| r-release-macos-x86_64 | 2.0.3 | 44.00 | 229.00 | 273.00 | OK | |
| r-release-windows-x86_64 | 2.0.3 | 98.00 | 222.00 | 320.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.3 | 13.00 | 64.00 | 77.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.3 | 44.00 | 183.00 | 227.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.3 | 108.00 | 288.00 | 396.00 | OK |
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(harmony)
Loading required package: Rcpp
• This is Harmony2 version 2.0.3
• Read the guide: run vignette()
• Get help: Visit the website at https://korsunskylab.github.io/harmony2/ and
report issues on https://github.com/immunogenomics/harmony/issues
>
> test_check("harmony")
87exists, retrying for cluster 4 3.40062
151exists, retrying for cluster 4 3.42304
138exists, retrying for cluster 9 3.36225
243exists, retrying for cluster 24 3.22521
176exists, retrying for cluster 26 0.90872
197exists, retrying for cluster 34 0.660487
2exists, retrying for cluster 35 3.46204
123exists, retrying for cluster 38 3.34945
21exists, retrying for cluster 38 3.19016
123exists, retrying for cluster 41 3.57522
33exists, retrying for cluster 42 2.2428
2exists, retrying for cluster 43 3.46094
223exists, retrying for cluster 45 3.39201
858exists, retrying for cluster 42 0.894107
Saving _problems/test_two_variable-11.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_two_variable.R:5:1'): (code run outside of `test_that()`) ──────
<std::logic_error/C++Error/error/condition>
Error: inv(): use of LAPACK must be enabled
Backtrace:
▆
1. ├─harmony::RunHarmony(...) at test_two_variable.R:5:1
2. └─harmony:::RunHarmony.default(...)
3. ├─base::tryCatch(...)
4. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─harmony:::harmonize(harmonyObj, max.iter.harmony, verbose)
6. └─harmonyObj$moe_correct_ridge_cpp()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang