CRAN Package Check Results for Maintainer James Craig <james.craig at certara.com>

CRAN Package Check Results for Maintainer ‘James Craig <james.craig at certara.com>’

Last updated on 2025-12-21 17:51:10 CET.

Package	ERROR	NOTE	OK
Certara.DarwinReporter			13
Certara.ModelResults			13
Certara.NLME8			13
Certara.R		2	11
Certara.RDarwin			13
Certara.RsNLME			13
Certara.RsNLME.ModelBuilder			13
Certara.RsNLME.ModelExecutor		9	4
Certara.VPCResults			13
Certara.Xpose.NLME			13
tidyvpc	4		9
vachette			13

Package Certara.DarwinReporter

Current CRAN status: OK: 13

Version: 1.1.0
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘DT’ ‘batchtools’ ‘data.table’ ‘dplyr’ ‘ggplot2’ ‘htmltools’ ‘jsonlite’ ‘magrittr’ ‘methods’ ‘plotly’ ‘reshape’ ‘rlang’ ‘shiny’ ‘shinyWidgets’ ‘shinyjqui’ ‘shinyjs’ ‘shinymaterial’ ‘sortable’ ‘ssh’ ‘xml2’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package Certara.RDarwin

Current CRAN status: OK: 13

Package Certara.RsNLME

Current CRAN status: OK: 13

Package Certara.RsNLME.ModelBuilder

Current CRAN status: OK: 13

Package Certara.RsNLME.ModelExecutor

Current CRAN status: NOTE: 9, OK: 4

Version: 3.0.2
Check: R code for possible problems
Result: NOTE .run_shiny_RsNLME : server: no visible global function definition for ‘addTablesToColumnMapping’ Undefined global functions or variables: addTablesToColumnMapping Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Package Certara.VPCResults

Current CRAN status: OK: 13

Package Certara.Xpose.NLME

Current CRAN status: OK: 13

Package tidyvpc

Current CRAN status: ERROR: 4, OK: 9

Version: 1.5.2
Check: tests
Result: ERROR Running ‘testthat.R’ [18s/17s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidyvpc) tidyvpc is part of Certara.R! Follow the link below to learn more about PMx R package development at Certara. https://certara.github.io/R-Certara/ > registered_threads <- data.table::getDTthreads() > data.table::setDTthreads(2) > on.exit(data.table::setDTthreads(registered_threads)) > test_check("tidyvpc") Saving _problems/test-censoring-28.R [ FAIL 1 | WARN 0 | SKIP 12 | PASS 41 ] ══ Skipped tests (12) ══════════════════════════════════════════════════════════ • On CRAN (8): 'test-binless.R:18:3', 'test-binless.R:55:3', 'test-binless.R:89:3', 'test-binless.R:117:3', 'test-binless.R:143:3', 'test-binless.R:162:3', 'test-binless.R:204:3', 'test_npde.R:21:3' • get_os() == "windows" is not TRUE (4): 'test-plot.R:18:3', 'test-plot.R:42:3', 'test-plot.R:78:3', 'test-plot.R:108:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-censoring.R:28:3'): censoring output is valid ────────────────── Error in ``[.data.table`(obs_data, , `:=`(num_blq, ifelse(DV < LLOQ, TRUE, FALSE)), by = STUDY)`: attempt access index 10/10 in VECTOR_ELT Backtrace: ▆ 1. ├─obs_data[, `:=`(num_blq, ifelse(DV < LLOQ, TRUE, FALSE)), by = STUDY] at test-censoring.R:28:3 2. └─data.table:::`[.data.table`(...) at test-censoring.R:28:3 [ FAIL 1 | WARN 0 | SKIP 12 | PASS 41 ] Deleting unused snapshots: 'plot/bins-without-stats.svg', 'plot/bins-ypc-without-stats.svg', 'plot/censored-plot-with-aql.svg', 'plot/censored-plot-with-bql-aql.svg', 'plot/censored-plot-with-bql.svg', 'plot/one-sided-strat-formula-with-facet-wrap.svg', 'plot/single-value-group.svg', and 'plot/two-sided-strat-formula-with-facet-grid.svg' Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.5.2
Check: tests
Result: ERROR Running ‘testthat.R’ [10s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidyvpc) tidyvpc is part of Certara.R! Follow the link below to learn more about PMx R package development at Certara. https://certara.github.io/R-Certara/ > registered_threads <- data.table::getDTthreads() > data.table::setDTthreads(2) > on.exit(data.table::setDTthreads(registered_threads)) > test_check("tidyvpc") Saving _problems/test-censoring-28.R [ FAIL 1 | WARN 0 | SKIP 12 | PASS 41 ] ══ Skipped tests (12) ══════════════════════════════════════════════════════════ • On CRAN (8): 'test-binless.R:18:3', 'test-binless.R:55:3', 'test-binless.R:89:3', 'test-binless.R:117:3', 'test-binless.R:143:3', 'test-binless.R:162:3', 'test-binless.R:204:3', 'test_npde.R:21:3' • get_os() == "windows" is not TRUE (4): 'test-plot.R:18:3', 'test-plot.R:42:3', 'test-plot.R:78:3', 'test-plot.R:108:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-censoring.R:28:3'): censoring output is valid ────────────────── Error in ``[.data.table`(obs_data, , `:=`(num_blq, ifelse(DV < LLOQ, TRUE, FALSE)), by = STUDY)`: attempt access index 10/10 in VECTOR_ELT Backtrace: ▆ 1. ├─obs_data[, `:=`(num_blq, ifelse(DV < LLOQ, TRUE, FALSE)), by = STUDY] at test-censoring.R:28:3 2. └─data.table:::`[.data.table`(...) at test-censoring.R:28:3 [ FAIL 1 | WARN 0 | SKIP 12 | PASS 41 ] Deleting unused snapshots: 'plot/bins-without-stats.svg', 'plot/bins-ypc-without-stats.svg', 'plot/censored-plot-with-aql.svg', 'plot/censored-plot-with-bql-aql.svg', 'plot/censored-plot-with-bql.svg', 'plot/one-sided-strat-formula-with-facet-wrap.svg', 'plot/single-value-group.svg', and 'plot/two-sided-strat-formula-with-facet-grid.svg' Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.5.2
Check: tests
Result: ERROR Running ‘testthat.R’ [30s/41s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidyvpc) tidyvpc is part of Certara.R! Follow the link below to learn more about PMx R package development at Certara. https://certara.github.io/R-Certara/ > registered_threads <- data.table::getDTthreads() > data.table::setDTthreads(2) > on.exit(data.table::setDTthreads(registered_threads)) > test_check("tidyvpc") Saving _problems/test-censoring-28.R [ FAIL 1 | WARN 0 | SKIP 12 | PASS 41 ] ══ Skipped tests (12) ══════════════════════════════════════════════════════════ • On CRAN (8): 'test-binless.R:18:3', 'test-binless.R:55:3', 'test-binless.R:89:3', 'test-binless.R:117:3', 'test-binless.R:143:3', 'test-binless.R:162:3', 'test-binless.R:204:3', 'test_npde.R:21:3' • get_os() == "windows" is not TRUE (4): 'test-plot.R:18:3', 'test-plot.R:42:3', 'test-plot.R:78:3', 'test-plot.R:108:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-censoring.R:28:3'): censoring output is valid ────────────────── Error in ``[.data.table`(obs_data, , `:=`(num_blq, ifelse(DV < LLOQ, TRUE, FALSE)), by = STUDY)`: attempt access index 10/10 in VECTOR_ELT Backtrace: ▆ 1. ├─obs_data[, `:=`(num_blq, ifelse(DV < LLOQ, TRUE, FALSE)), by = STUDY] at test-censoring.R:28:3 2. └─data.table:::`[.data.table`(...) at test-censoring.R:28:3 [ FAIL 1 | WARN 0 | SKIP 12 | PASS 41 ] Deleting unused snapshots: 'plot/bins-without-stats.svg', 'plot/bins-ypc-without-stats.svg', 'plot/censored-plot-with-aql.svg', 'plot/censored-plot-with-bql-aql.svg', 'plot/censored-plot-with-bql.svg', 'plot/one-sided-strat-formula-with-facet-wrap.svg', 'plot/single-value-group.svg', and 'plot/two-sided-strat-formula-with-facet-grid.svg' Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.5.2
Check: tests
Result: ERROR Running ‘testthat.R’ [25s/30s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidyvpc) tidyvpc is part of Certara.R! Follow the link below to learn more about PMx R package development at Certara. https://certara.github.io/R-Certara/ > registered_threads <- data.table::getDTthreads() > data.table::setDTthreads(2) > on.exit(data.table::setDTthreads(registered_threads)) > test_check("tidyvpc") Saving _problems/test-censoring-28.R [ FAIL 1 | WARN 0 | SKIP 12 | PASS 41 ] ══ Skipped tests (12) ══════════════════════════════════════════════════════════ • On CRAN (8): 'test-binless.R:18:3', 'test-binless.R:55:3', 'test-binless.R:89:3', 'test-binless.R:117:3', 'test-binless.R:143:3', 'test-binless.R:162:3', 'test-binless.R:204:3', 'test_npde.R:21:3' • get_os() == "windows" is not TRUE (4): 'test-plot.R:18:3', 'test-plot.R:42:3', 'test-plot.R:78:3', 'test-plot.R:108:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-censoring.R:28:3'): censoring output is valid ────────────────── Error in ``[.data.table`(obs_data, , `:=`(num_blq, ifelse(DV < LLOQ, TRUE, FALSE)), by = STUDY)`: attempt access index 10/10 in VECTOR_ELT Backtrace: ▆ 1. ├─obs_data[, `:=`(num_blq, ifelse(DV < LLOQ, TRUE, FALSE)), by = STUDY] at test-censoring.R:28:3 2. └─data.table:::`[.data.table`(...) at test-censoring.R:28:3 [ FAIL 1 | WARN 0 | SKIP 12 | PASS 41 ] Deleting unused snapshots: 'plot/bins-without-stats.svg', 'plot/bins-ypc-without-stats.svg', 'plot/censored-plot-with-aql.svg', 'plot/censored-plot-with-bql-aql.svg', 'plot/censored-plot-with-bql.svg', 'plot/one-sided-strat-formula-with-facet-wrap.svg', 'plot/single-value-group.svg', and 'plot/two-sided-strat-formula-with-facet-grid.svg' Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Package vachette

Current CRAN status: OK: 13