Last updated on 2025-12-21 11:50:36 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| drugDemand | 13 | ||
| eventPred | 4 | 9 | |
| lrstat | 5 | 8 | |
| tmvtnsim | 13 | ||
| trtswitch | 4 | 2 | 7 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 4, OK: 9
Version: 0.2.9
Check: examples
Result: ERROR
Running examples in ‘eventPred-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getPrediction
> ### Title: Enrollment and event prediction
> ### Aliases: getPrediction
>
> ### ** Examples
>
> # Event prediction after enrollment completion
> set.seed(3000)
>
> pred <- getPrediction(
+ df = interimData2, to_predict = "event only",
+ target_d = 200,
+ event_model = "weibull",
+ dropout_model = "exponential",
+ pilevel = 0.90, nreps = 100)
Error in `[.data.table`(newEvents[get("event") == 1], do.call("order", :
attempt access index 7/7 in VECTOR_ELT
Calls: getPrediction -> predictEvent -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.9
Check: tests
Result: ERROR
Running ‘testthat.R’ [28s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(eventPred)
>
> test_check("eventPred")
Saving _problems/test-getPrediction-30.R
Saving _problems/test-getPrediction-51.R
Saving _problems/test-getPrediction-69.R
Saving _problems/test-predictEvent-33.R
Saving _problems/test-predictEvent-74.R
Saving _problems/test-predictEvent-102.R
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 28 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-getPrediction.R:21:3'): event prediction at design stage ───────
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::getPrediction(...) at test-getPrediction.R:21:3
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-getPrediction.R:42:3'): event prediction during enrollment phase ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::getPrediction(...) at test-getPrediction.R:42:3
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-getPrediction.R:63:3'): event prediction after enrollment completion ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::getPrediction(...) at test-getPrediction.R:63:3
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-predictEvent.R:27:3'): event prediction at design stage ────────
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::predictEvent(...) at test-predictEvent.R:27:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-predictEvent.R:68:3'): event prediction during enrollment stage ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::predictEvent(...) at test-predictEvent.R:68:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-predictEvent.R:97:3'): event prediction after enrollment completion ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::predictEvent(...) at test-predictEvent.R:97:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 28 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.9
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘event_prediction_after_enrollment_completion.Rmd’ using rmarkdown
Quitting from event_prediction_after_enrollment_completion.Rmd:28-40 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 7/7 in VECTOR_ELT
---
Backtrace:
▆
1. └─eventPred::getPrediction(...)
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'event_prediction_after_enrollment_completion.Rmd' failed with diagnostics:
attempt access index 7/7 in VECTOR_ELT
--- failed re-building ‘event_prediction_after_enrollment_completion.Rmd’
--- re-building ‘event_prediction_at_the_design_stage.Rmd’ using rmarkdown
Quitting from event_prediction_at_the_design_stage.Rmd:69-83 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 9/9 in VECTOR_ELT
---
Backtrace:
▆
1. └─eventPred::getPrediction(...)
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'event_prediction_at_the_design_stage.Rmd' failed with diagnostics:
attempt access index 9/9 in VECTOR_ELT
--- failed re-building ‘event_prediction_at_the_design_stage.Rmd’
--- re-building ‘event_prediction_before_enrollment_completion.Rmd’ using rmarkdown
Quitting from event_prediction_before_enrollment_completion.Rmd:27-40 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 7/7 in VECTOR_ELT
---
Backtrace:
▆
1. └─eventPred::getPrediction(...)
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'event_prediction_before_enrollment_completion.Rmd' failed with diagnostics:
attempt access index 7/7 in VECTOR_ELT
--- failed re-building ‘event_prediction_before_enrollment_completion.Rmd’
--- re-building ‘event_prediction_incorporating_covariates.Rmd’ using rmarkdown
Quitting from event_prediction_incorporating_covariates.Rmd:28-45 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 7/7 in VECTOR_ELT
---
Backtrace:
▆
1. └─eventPred::getPrediction(...)
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'event_prediction_incorporating_covariates.Rmd' failed with diagnostics:
attempt access index 7/7 in VECTOR_ELT
--- failed re-building ‘event_prediction_incorporating_covariates.Rmd’
--- re-building ‘event_prediction_incorporating_prior_information.Rmd’ using rmarkdown
Quitting from event_prediction_incorporating_prior_information.Rmd:27-48 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 7/7 in VECTOR_ELT
---
Backtrace:
▆
1. └─eventPred::getPrediction(...)
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'event_prediction_incorporating_prior_information.Rmd' failed with diagnostics:
attempt access index 7/7 in VECTOR_ELT
--- failed re-building ‘event_prediction_incorporating_prior_information.Rmd’
SUMMARY: processing the following files failed:
‘event_prediction_after_enrollment_completion.Rmd’
‘event_prediction_at_the_design_stage.Rmd’
‘event_prediction_before_enrollment_completion.Rmd’
‘event_prediction_incorporating_covariates.Rmd’
‘event_prediction_incorporating_prior_information.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.9
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(eventPred)
>
> test_check("eventPred")
Saving _problems/test-getPrediction-30.R
Saving _problems/test-getPrediction-51.R
Saving _problems/test-getPrediction-69.R
Saving _problems/test-predictEvent-33.R
Saving _problems/test-predictEvent-74.R
Saving _problems/test-predictEvent-102.R
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 28 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-getPrediction.R:21:3'): event prediction at design stage ───────
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::getPrediction(...) at test-getPrediction.R:21:3
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-getPrediction.R:42:3'): event prediction during enrollment phase ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::getPrediction(...) at test-getPrediction.R:42:3
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-getPrediction.R:63:3'): event prediction after enrollment completion ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::getPrediction(...) at test-getPrediction.R:63:3
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-predictEvent.R:27:3'): event prediction at design stage ────────
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::predictEvent(...) at test-predictEvent.R:27:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-predictEvent.R:68:3'): event prediction during enrollment stage ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::predictEvent(...) at test-predictEvent.R:68:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-predictEvent.R:97:3'): event prediction after enrollment completion ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::predictEvent(...) at test-predictEvent.R:97:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 28 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.9
Check: examples
Result: ERROR
Running examples in ‘eventPred-Ex.R’ failed
The error most likely occurred in:
> ### Name: getPrediction
> ### Title: Enrollment and event prediction
> ### Aliases: getPrediction
>
> ### ** Examples
>
> # Event prediction after enrollment completion
> set.seed(3000)
>
> pred <- getPrediction(
+ df = interimData2, to_predict = "event only",
+ target_d = 200,
+ event_model = "weibull",
+ dropout_model = "exponential",
+ pilevel = 0.90, nreps = 100)
Error in `[.data.table`(newEvents[get("event") == 1], do.call("order", :
attempt access index 7/7 in VECTOR_ELT
Calls: getPrediction -> predictEvent -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.9
Check: tests
Result: ERROR
Running ‘testthat.R’ [35s/41s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(eventPred)
>
> test_check("eventPred")
Saving _problems/test-getPrediction-30.R
Saving _problems/test-getPrediction-51.R
Saving _problems/test-getPrediction-69.R
Saving _problems/test-predictEvent-33.R
Saving _problems/test-predictEvent-74.R
Saving _problems/test-predictEvent-102.R
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 28 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-getPrediction.R:21:3'): event prediction at design stage ───────
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::getPrediction(...) at test-getPrediction.R:21:3
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-getPrediction.R:42:3'): event prediction during enrollment phase ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::getPrediction(...) at test-getPrediction.R:42:3
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-getPrediction.R:63:3'): event prediction after enrollment completion ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::getPrediction(...) at test-getPrediction.R:63:3
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-predictEvent.R:27:3'): event prediction at design stage ────────
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::predictEvent(...) at test-predictEvent.R:27:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-predictEvent.R:68:3'): event prediction during enrollment stage ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::predictEvent(...) at test-predictEvent.R:68:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-predictEvent.R:97:3'): event prediction after enrollment completion ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::predictEvent(...) at test-predictEvent.R:97:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 28 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.9
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘event_prediction_after_enrollment_completion.Rmd’ using rmarkdown
Quitting from event_prediction_after_enrollment_completion.Rmd:28-40 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 7/7 in VECTOR_ELT
---
Backtrace:
▆
1. └─eventPred::getPrediction(...)
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'event_prediction_after_enrollment_completion.Rmd' failed with diagnostics:
attempt access index 7/7 in VECTOR_ELT
--- failed re-building ‘event_prediction_after_enrollment_completion.Rmd’
--- re-building ‘event_prediction_at_the_design_stage.Rmd’ using rmarkdown
Quitting from event_prediction_at_the_design_stage.Rmd:69-83 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 9/9 in VECTOR_ELT
---
Backtrace:
▆
1. └─eventPred::getPrediction(...)
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'event_prediction_at_the_design_stage.Rmd' failed with diagnostics:
attempt access index 9/9 in VECTOR_ELT
--- failed re-building ‘event_prediction_at_the_design_stage.Rmd’
--- re-building ‘event_prediction_before_enrollment_completion.Rmd’ using rmarkdown
Quitting from event_prediction_before_enrollment_completion.Rmd:27-40 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 7/7 in VECTOR_ELT
---
Backtrace:
▆
1. └─eventPred::getPrediction(...)
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'event_prediction_before_enrollment_completion.Rmd' failed with diagnostics:
attempt access index 7/7 in VECTOR_ELT
--- failed re-building ‘event_prediction_before_enrollment_completion.Rmd’
--- re-building ‘event_prediction_incorporating_covariates.Rmd’ using rmarkdown
Quitting from event_prediction_incorporating_covariates.Rmd:28-45 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 7/7 in VECTOR_ELT
---
Backtrace:
▆
1. └─eventPred::getPrediction(...)
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'event_prediction_incorporating_covariates.Rmd' failed with diagnostics:
attempt access index 7/7 in VECTOR_ELT
--- failed re-building ‘event_prediction_incorporating_covariates.Rmd’
--- re-building ‘event_prediction_incorporating_prior_information.Rmd’ using rmarkdown
Quitting from event_prediction_incorporating_prior_information.Rmd:27-48 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 7/7 in VECTOR_ELT
---
Backtrace:
▆
1. └─eventPred::getPrediction(...)
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'event_prediction_incorporating_prior_information.Rmd' failed with diagnostics:
attempt access index 7/7 in VECTOR_ELT
--- failed re-building ‘event_prediction_incorporating_prior_information.Rmd’
SUMMARY: processing the following files failed:
‘event_prediction_after_enrollment_completion.Rmd’
‘event_prediction_at_the_design_stage.Rmd’
‘event_prediction_before_enrollment_completion.Rmd’
‘event_prediction_incorporating_covariates.Rmd’
‘event_prediction_incorporating_prior_information.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.9
Check: tests
Result: ERROR
Running ‘testthat.R’ [31s/83s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(eventPred)
>
> test_check("eventPred")
Saving _problems/test-getPrediction-30.R
Saving _problems/test-getPrediction-51.R
Saving _problems/test-getPrediction-69.R
Saving _problems/test-predictEvent-33.R
Saving _problems/test-predictEvent-74.R
Saving _problems/test-predictEvent-102.R
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 28 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-getPrediction.R:21:3'): event prediction at design stage ───────
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::getPrediction(...) at test-getPrediction.R:21:3
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-getPrediction.R:42:3'): event prediction during enrollment phase ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::getPrediction(...) at test-getPrediction.R:42:3
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-getPrediction.R:63:3'): event prediction after enrollment completion ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::getPrediction(...) at test-getPrediction.R:63:3
2. └─eventPred::predictEvent(...)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-predictEvent.R:27:3'): event prediction at design stage ────────
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::predictEvent(...) at test-predictEvent.R:27:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-predictEvent.R:68:3'): event prediction during enrollment stage ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::predictEvent(...) at test-predictEvent.R:68:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-predictEvent.R:97:3'): event prediction after enrollment completion ──
Error in ``[.data.table`(newEvents[get("event") == 1], do.call("order", lapply(c("draw", "totalTime"), as.name)), `:=`(n = seq_len(.N)), by = "draw")`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─eventPred::predictEvent(...) at test-predictEvent.R:97:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 28 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 5, OK: 8
Version: 0.2.15
Check: compiled code
Result: NOTE
File ‘lrstat/libs/lrstat.so’:
Found non-API call to R: ‘ATTRIB’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.15
Check: installed package size
Result: NOTE
installed size is 93.6Mb
sub-directories of 1Mb or more:
help 1.1Mb
libs 91.2Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 4, NOTE: 2, OK: 7
Version: 0.2.2
Check: compiled code
Result: NOTE
File ‘trtswitch/libs/trtswitch.so’:
Found non-API call to R: ‘ATTRIB’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.2
Check: examples
Result: ERROR
Running examples in ‘trtswitch-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: preptdc
> ### Title: Prepare Survival Data With Time-Dependent Covariates
> ### Aliases: preptdc
>
> ### ** Examples
>
>
> surv_data <- preptdc(adsl, adtdc, nodup = TRUE)
Error in `[.data.table`(data3, , `:=`(temp_col = data.table::nafill(get(aval), :
attempt access index 7/7 in VECTOR_ELT
Calls: preptdc -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.2
Check: examples
Result: ERROR
Running examples in ‘trtswitch-Ex.R’ failed
The error most likely occurred in:
> ### Name: preptdc
> ### Title: Prepare Survival Data With Time-Dependent Covariates
> ### Aliases: preptdc
>
> ### ** Examples
>
>
> surv_data <- preptdc(adsl, adtdc, nodup = TRUE)
Error in `[.data.table`(data3, , `:=`(temp_col = data.table::nafill(get(aval), :
attempt access index 7/7 in VECTOR_ELT
Calls: preptdc -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.2
Check: installed package size
Result: NOTE
installed size is 30.9Mb
sub-directories of 1Mb or more:
libs 29.9Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64