Last updated on 2025-12-21 11:50:39 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| backports | 13 | ||
| base64url | 13 | ||
| BatchExperiments | 13 | ||
| batchtools | 4 | 2 | 7 |
| checkmate | 4 | 9 | |
| fail | 2 | 11 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 4, NOTE: 2, OK: 7
Version: 0.9.18
Check: examples
Result: ERROR
Running examples in ‘batchtools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: chunk
> ### Title: Chunk Jobs for Sequential Execution
> ### Aliases: chunk lpt binpack
>
> ### ** Examples
>
> ## Don't show:
> batchtools:::example_push_temp(2)
> ## End(Don't show)
> ch = chunk(1:10, n.chunks = 2)
> table(ch)
ch
1 2
5 5
>
> ch = chunk(rep(1, 10), chunk.size = 2)
> table(ch)
ch
1 2 3 4 5
2 2 2 2 2
>
> set.seed(1)
> x = runif(10)
> ch = lpt(x, n.chunks = 2)
> sapply(split(x, ch), sum)
1 2
2.808393 2.706746
>
> set.seed(1)
> x = runif(10)
> ch = binpack(x, 1)
> sapply(split(x, ch), sum)
1 2 3 4 5 6
0.9446753 0.9699941 0.8983897 0.9263065 0.8307960 0.9449773
>
> # Job chunking
> tmp = makeRegistry(file.dir = NA, make.default = FALSE)
No readable configuration file found
Created registry in '/home/hornik/tmp/scratch/RtmpmZTDgY/registry1d28475316755a' using cluster functions 'Interactive'
> ids = batchMap(identity, 1:25, reg = tmp)
Adding 25 jobs ...
>
> ### Group into chunks with 10 jobs each
> library(data.table)
Attaching package: ‘data.table’
The following object is masked from ‘package:base’:
%notin%
> ids[, chunk := chunk(job.id, chunk.size = 10)]
> print(ids[, .N, by = chunk])
chunk N
<int> <int>
1: 3 8
2: 1 9
3: 2 8
>
> ### Group into 4 chunks
> ids[, chunk := chunk(job.id, n.chunks = 4)]
> print(ids[, .N, by = chunk])
chunk N
<int> <int>
1: 2 6
2: 3 6
3: 4 6
4: 1 7
>
> ### Submit to batch system
> submitJobs(ids = ids, reg = tmp)
Submitting 25 jobs in 4 chunks using cluster functions 'Interactive' ...
>
> # Grouped chunking
> tmp = makeExperimentRegistry(file.dir = NA, make.default = FALSE)
No readable configuration file found
Created registry in '/home/hornik/tmp/scratch/RtmpmZTDgY/registry1d2847521a4c18' using cluster functions 'Interactive'
> prob = addProblem(reg = tmp, "prob1", data = iris, fun = function(job, data) nrow(data))
Adding problem 'prob1'
> prob = addProblem(reg = tmp, "prob2", data = Titanic, fun = function(job, data) nrow(data))
Adding problem 'prob2'
> algo = addAlgorithm(reg = tmp, "algo", fun = function(job, data, instance, i, ...) problem)
Adding algorithm 'algo'
> prob.designs = list(prob1 = data.table(), prob2 = data.table(x = 1:2))
> algo.designs = list(algo = data.table(i = 1:3))
> addExperiments(prob.designs, algo.designs, repls = 3, reg = tmp)
Adding 9 experiments ('prob1'[1] x 'algo'[3] x repls[3]) ...
Adding 18 experiments ('prob2'[2] x 'algo'[3] x repls[3]) ...
>
> ### Group into chunks of 5 jobs, but do not put multiple problems into the same chunk
> # -> only one problem has to be loaded per chunk, and only once because it is cached
> ids = getJobTable(reg = tmp)[, .(job.id, problem, algorithm)]
> ids[, chunk := chunk(job.id, chunk.size = 5), by = "problem"]
Error in `[.data.table`(ids, , `:=`(chunk, chunk(job.id, chunk.size = 5)), :
attempt access index 3/3 in VECTOR_ELT
Calls: [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.9.18
Check: examples
Result: ERROR
Running examples in ‘batchtools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: chunk
> ### Title: Chunk Jobs for Sequential Execution
> ### Aliases: chunk lpt binpack
>
> ### ** Examples
>
> ## Don't show:
> batchtools:::example_push_temp(2)
> ## End(Don't show)
> ch = chunk(1:10, n.chunks = 2)
> table(ch)
ch
1 2
5 5
>
> ch = chunk(rep(1, 10), chunk.size = 2)
> table(ch)
ch
1 2 3 4 5
2 2 2 2 2
>
> set.seed(1)
> x = runif(10)
> ch = lpt(x, n.chunks = 2)
> sapply(split(x, ch), sum)
1 2
2.808393 2.706746
>
> set.seed(1)
> x = runif(10)
> ch = binpack(x, 1)
> sapply(split(x, ch), sum)
1 2 3 4 5 6
0.9446753 0.9699941 0.8983897 0.9263065 0.8307960 0.9449773
>
> # Job chunking
> tmp = makeRegistry(file.dir = NA, make.default = FALSE)
No readable configuration file found
Created registry in '/tmp/RtmpJsAVYE/registry1ca01719fbc4d9' using cluster functions 'Interactive'
> ids = batchMap(identity, 1:25, reg = tmp)
Adding 25 jobs ...
>
> ### Group into chunks with 10 jobs each
> library(data.table)
Attaching package: ‘data.table’
The following object is masked from ‘package:base’:
%notin%
> ids[, chunk := chunk(job.id, chunk.size = 10)]
> print(ids[, .N, by = chunk])
chunk N
<int> <int>
1: 3 8
2: 1 9
3: 2 8
>
> ### Group into 4 chunks
> ids[, chunk := chunk(job.id, n.chunks = 4)]
> print(ids[, .N, by = chunk])
chunk N
<int> <int>
1: 2 6
2: 3 6
3: 4 6
4: 1 7
>
> ### Submit to batch system
> submitJobs(ids = ids, reg = tmp)
Submitting 25 jobs in 4 chunks using cluster functions 'Interactive' ...
>
> # Grouped chunking
> tmp = makeExperimentRegistry(file.dir = NA, make.default = FALSE)
No readable configuration file found
Created registry in '/tmp/RtmpJsAVYE/registry1ca01716688d40' using cluster functions 'Interactive'
> prob = addProblem(reg = tmp, "prob1", data = iris, fun = function(job, data) nrow(data))
Adding problem 'prob1'
> prob = addProblem(reg = tmp, "prob2", data = Titanic, fun = function(job, data) nrow(data))
Adding problem 'prob2'
> algo = addAlgorithm(reg = tmp, "algo", fun = function(job, data, instance, i, ...) problem)
Adding algorithm 'algo'
> prob.designs = list(prob1 = data.table(), prob2 = data.table(x = 1:2))
> algo.designs = list(algo = data.table(i = 1:3))
> addExperiments(prob.designs, algo.designs, repls = 3, reg = tmp)
Adding 9 experiments ('prob1'[1] x 'algo'[3] x repls[3]) ...
Adding 18 experiments ('prob2'[2] x 'algo'[3] x repls[3]) ...
>
> ### Group into chunks of 5 jobs, but do not put multiple problems into the same chunk
> # -> only one problem has to be loaded per chunk, and only once because it is cached
> ids = getJobTable(reg = tmp)[, .(job.id, problem, algorithm)]
> ids[, chunk := chunk(job.id, chunk.size = 5), by = "problem"]
Error in `[.data.table`(ids, , `:=`(chunk, chunk(job.id, chunk.size = 5)), :
attempt access index 3/3 in VECTOR_ELT
Calls: [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.9.18
Check: examples
Result: ERROR
Running examples in ‘batchtools-Ex.R’ failed
The error most likely occurred in:
> ### Name: chunk
> ### Title: Chunk Jobs for Sequential Execution
> ### Aliases: chunk lpt binpack
>
> ### ** Examples
>
> ## Don't show:
> batchtools:::example_push_temp(2)
> ## End(Don't show)
> ch = chunk(1:10, n.chunks = 2)
> table(ch)
ch
1 2
5 5
>
> ch = chunk(rep(1, 10), chunk.size = 2)
> table(ch)
ch
1 2 3 4 5
2 2 2 2 2
>
> set.seed(1)
> x = runif(10)
> ch = lpt(x, n.chunks = 2)
> sapply(split(x, ch), sum)
1 2
2.808393 2.706746
>
> set.seed(1)
> x = runif(10)
> ch = binpack(x, 1)
> sapply(split(x, ch), sum)
1 2 3 4 5 6
0.9446753 0.9699941 0.8983897 0.9263065 0.8307960 0.9449773
>
> # Job chunking
> tmp = makeRegistry(file.dir = NA, make.default = FALSE)
No readable configuration file found
Created registry in '/tmp/RtmpMtk3HI/working_dir/Rtmp9YWqvI/registry2ba267724a9cac' using cluster functions 'Interactive'
> ids = batchMap(identity, 1:25, reg = tmp)
Adding 25 jobs ...
>
> ### Group into chunks with 10 jobs each
> library(data.table)
Attaching package: ‘data.table’
The following object is masked from ‘package:base’:
%notin%
> ids[, chunk := chunk(job.id, chunk.size = 10)]
> print(ids[, .N, by = chunk])
chunk N
<int> <int>
1: 3 8
2: 1 9
3: 2 8
>
> ### Group into 4 chunks
> ids[, chunk := chunk(job.id, n.chunks = 4)]
> print(ids[, .N, by = chunk])
chunk N
<int> <int>
1: 2 6
2: 3 6
3: 4 6
4: 1 7
>
> ### Submit to batch system
> submitJobs(ids = ids, reg = tmp)
Submitting 25 jobs in 4 chunks using cluster functions 'Interactive' ...
>
> # Grouped chunking
> tmp = makeExperimentRegistry(file.dir = NA, make.default = FALSE)
No readable configuration file found
Created registry in '/tmp/RtmpMtk3HI/working_dir/Rtmp9YWqvI/registry2ba2675bb58334' using cluster functions 'Interactive'
> prob = addProblem(reg = tmp, "prob1", data = iris, fun = function(job, data) nrow(data))
Adding problem 'prob1'
> prob = addProblem(reg = tmp, "prob2", data = Titanic, fun = function(job, data) nrow(data))
Adding problem 'prob2'
> algo = addAlgorithm(reg = tmp, "algo", fun = function(job, data, instance, i, ...) problem)
Adding algorithm 'algo'
> prob.designs = list(prob1 = data.table(), prob2 = data.table(x = 1:2))
> algo.designs = list(algo = data.table(i = 1:3))
> addExperiments(prob.designs, algo.designs, repls = 3, reg = tmp)
Adding 9 experiments ('prob1'[1] x 'algo'[3] x repls[3]) ...
Adding 18 experiments ('prob2'[2] x 'algo'[3] x repls[3]) ...
>
> ### Group into chunks of 5 jobs, but do not put multiple problems into the same chunk
> # -> only one problem has to be loaded per chunk, and only once because it is cached
> ids = getJobTable(reg = tmp)[, .(job.id, problem, algorithm)]
> ids[, chunk := chunk(job.id, chunk.size = 5), by = "problem"]
Error in `[.data.table`(ids, , `:=`(chunk, chunk(job.id, chunk.size = 5)), :
attempt access index 3/3 in VECTOR_ELT
Calls: [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.9.18
Check: examples
Result: ERROR
Running examples in ‘batchtools-Ex.R’ failed
The error most likely occurred in:
> ### Name: chunk
> ### Title: Chunk Jobs for Sequential Execution
> ### Aliases: chunk lpt binpack
>
> ### ** Examples
>
> ## Don't show:
> batchtools:::example_push_temp(2)
> ## End(Don't show)
> ch = chunk(1:10, n.chunks = 2)
> table(ch)
ch
1 2
5 5
>
> ch = chunk(rep(1, 10), chunk.size = 2)
> table(ch)
ch
1 2 3 4 5
2 2 2 2 2
>
> set.seed(1)
> x = runif(10)
> ch = lpt(x, n.chunks = 2)
> sapply(split(x, ch), sum)
1 2
2.808393 2.706746
>
> set.seed(1)
> x = runif(10)
> ch = binpack(x, 1)
> sapply(split(x, ch), sum)
1 2 3 4 5 6
0.9446753 0.9699941 0.8983897 0.9263065 0.8307960 0.9449773
>
> # Job chunking
> tmp = makeRegistry(file.dir = NA, make.default = FALSE)
No readable configuration file found
Created registry in '/tmp/Rtmp0XroyX/working_dir/RtmpMaK6if/registry2e5576873869a' using cluster functions 'Interactive'
> ids = batchMap(identity, 1:25, reg = tmp)
Adding 25 jobs ...
>
> ### Group into chunks with 10 jobs each
> library(data.table)
Attaching package: ‘data.table’
The following object is masked from ‘package:base’:
%notin%
> ids[, chunk := chunk(job.id, chunk.size = 10)]
> print(ids[, .N, by = chunk])
chunk N
<int> <int>
1: 3 8
2: 1 9
3: 2 8
>
> ### Group into 4 chunks
> ids[, chunk := chunk(job.id, n.chunks = 4)]
> print(ids[, .N, by = chunk])
chunk N
<int> <int>
1: 2 6
2: 3 6
3: 4 6
4: 1 7
>
> ### Submit to batch system
> submitJobs(ids = ids, reg = tmp)
Submitting 25 jobs in 4 chunks using cluster functions 'Interactive' ...
>
> # Grouped chunking
> tmp = makeExperimentRegistry(file.dir = NA, make.default = FALSE)
No readable configuration file found
Created registry in '/tmp/Rtmp0XroyX/working_dir/RtmpMaK6if/registry2e557649565ed9' using cluster functions 'Interactive'
> prob = addProblem(reg = tmp, "prob1", data = iris, fun = function(job, data) nrow(data))
Adding problem 'prob1'
> prob = addProblem(reg = tmp, "prob2", data = Titanic, fun = function(job, data) nrow(data))
Adding problem 'prob2'
> algo = addAlgorithm(reg = tmp, "algo", fun = function(job, data, instance, i, ...) problem)
Adding algorithm 'algo'
> prob.designs = list(prob1 = data.table(), prob2 = data.table(x = 1:2))
> algo.designs = list(algo = data.table(i = 1:3))
> addExperiments(prob.designs, algo.designs, repls = 3, reg = tmp)
Adding 9 experiments ('prob1'[1] x 'algo'[3] x repls[3]) ...
Adding 18 experiments ('prob2'[2] x 'algo'[3] x repls[3]) ...
>
> ### Group into chunks of 5 jobs, but do not put multiple problems into the same chunk
> # -> only one problem has to be loaded per chunk, and only once because it is cached
> ids = getJobTable(reg = tmp)[, .(job.id, problem, algorithm)]
> ids[, chunk := chunk(job.id, chunk.size = 5), by = "problem"]
Error in `[.data.table`(ids, , `:=`(chunk, chunk(job.id, chunk.size = 5)), :
attempt access index 3/3 in VECTOR_ELT
Calls: [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.9.18
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘doMPI’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.9.18
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 4, OK: 9
Version: 2.3.3
Check: compiled code
Result: NOTE
File ‘checkmate/libs/checkmate.so’:
Found non-API call to R: ‘ATTRIB’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 2, OK: 11
Version: 1.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Michel Lang <michellang@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Michel",
family = "Lang",
role = c("aut", "cre"),
email = "michellang@gmail.com")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc