Last updated on 2026-03-03 17:51:10 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.0 | 39.03 | 729.79 | 768.82 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.11.0 | 22.73 | 481.83 | 504.56 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.11.0 | 69.00 | 1188.07 | 1257.07 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.11.0 | 66.00 | 1215.06 | 1281.06 | OK | |
| r-devel-macos-arm64 | 0.11.0 | 8.00 | 120.00 | 128.00 | OK | |
| r-devel-windows-x86_64 | 0.11.0 | 37.00 | 488.00 | 525.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 52.10 | 746.38 | 798.48 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 36.68 | 734.52 | 771.20 | OK | |
| r-release-macos-arm64 | 0.11.0 | 8.00 | 113.00 | 121.00 | OK | |
| r-release-macos-x86_64 | 0.11.0 | 28.00 | 883.00 | 911.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 38.00 | 554.00 | 592.00 | OK | |
| r-oldrel-macos-arm64 | 0.11.0 | 8.00 | 109.00 | 117.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.11.0 | 27.00 | 614.00 | 641.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.11.0 | 35.00 | 510.00 | 545.00 | ERROR |
Version: 0.11.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [90s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-04 01:22:11.328067: Isomap START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.328333: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.331501: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.337528: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 01:22:11.351151: Isomap START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.3513: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.353851: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.360158: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 01:22:11.367481: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.367691: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.372249: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.38721: embedding
> test_pipeop_isomap.R: 2026-03-04 01:22:11.387747: DONE
> test_pipeop_isomap.R: 2026-03-04 01:22:11.394778: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.394929: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.441036: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.455871: embedding
> test_pipeop_isomap.R: 2026-03-04 01:22:11.456426: DONE
> test_pipeop_isomap.R: 2026-03-04 01:22:11.483217: Isomap START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.483321: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.487805: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.523246: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 01:22:11.532952: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.533153: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.541852: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.618879: embedding
> test_pipeop_isomap.R: 2026-03-04 01:22:11.62: DONE
> test_pipeop_isomap.R: 2026-03-04 01:22:11.669899: Isomap START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.670054: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.672365: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.678471: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 01:22:11.686123: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.686302: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.691144: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.706294: embedding
> test_pipeop_isomap.R: 2026-03-04 01:22:11.70675: DONE
> test_pipeop_isomap.R: 2026-03-04 01:22:11.741594: Isomap START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.741737: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.743967: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.750057: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 01:22:11.762552: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.762785: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.767486: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.782293: embedding
> test_pipeop_isomap.R: 2026-03-04 01:22:11.78774: DONE
> test_pipeop_isomap.R: 2026-03-04 01:22:11.815819: Isomap START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.815978: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.81824: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.824446: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 01:22:11.834847: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.835018: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.839518: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.853794: embedding
> test_pipeop_isomap.R: 2026-03-04 01:22:11.854147: DONE
> test_pipeop_isomap.R: 2026-03-04 01:22:11.872862: Isomap START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.872991: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.875243: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.88139: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 01:22:11.893242: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.893421: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.897982: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.912726: embedding
> test_pipeop_isomap.R: 2026-03-04 01:22:11.918394: DONE
> test_pipeop_isomap.R: 2026-03-04 01:22:11.947639: Isomap START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.947873: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.950259: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.956496: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 01:22:11.968966: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 01:22:11.969164: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:11.97363: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:11.988539: embedding
> test_pipeop_isomap.R: 2026-03-04 01:22:11.988946: DONE
> test_pipeop_isomap.R: 2026-03-04 01:22:12.010487: Isomap START
> test_pipeop_isomap.R: 2026-03-04 01:22:12.010615: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:12.012971: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:12.019012: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 01:22:12.040912: Isomap START
> test_pipeop_isomap.R: 2026-03-04 01:22:12.04105: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:12.043487: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:12.049539: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 01:22:12.064785: Isomap START
> test_pipeop_isomap.R: 2026-03-04 01:22:12.064938: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 01:22:12.067524: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 01:22:12.07416: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_info.R:3:1', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_subsample.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [257s/285s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-03 10:28:09.50891: Isomap START
> test_pipeop_isomap.R: 2026-03-03 10:28:09.509437: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:09.545274: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:09.580573: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 10:28:09.685498: Isomap START
> test_pipeop_isomap.R: 2026-03-03 10:28:09.685791: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:09.70859: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:09.741778: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 10:28:09.789837: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 10:28:09.790241: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:09.822767: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:09.9276: embedding
> test_pipeop_isomap.R: 2026-03-03 10:28:09.928701: DONE
> test_pipeop_isomap.R: 2026-03-03 10:28:09.97881: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 10:28:09.9791: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:10.038753: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:10.14381: embedding
> test_pipeop_isomap.R: 2026-03-03 10:28:10.144884: DONE
> test_pipeop_isomap.R: 2026-03-03 10:28:10.475903: Isomap START
> test_pipeop_isomap.R: 2026-03-03 10:28:10.476196: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:10.525927: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:10.807397: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 10:28:10.909343: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 10:28:10.909764: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:10.993591: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:11.763132: embedding
> test_pipeop_isomap.R: 2026-03-03 10:28:11.790476: DONE
> test_pipeop_isomap.R: 2026-03-03 10:28:12.184039: Isomap START
> test_pipeop_isomap.R: 2026-03-03 10:28:12.184346: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:12.193602: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:12.265904: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 10:28:12.330302: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 10:28:12.330714: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:12.390352: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:12.478794: embedding
> test_pipeop_isomap.R: 2026-03-03 10:28:12.497176: DONE
> test_pipeop_isomap.R: 2026-03-03 10:28:12.784096: Isomap START
> test_pipeop_isomap.R: 2026-03-03 10:28:12.784397: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:12.790723: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:12.847413: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 10:28:12.961936: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 10:28:12.962376: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:13.012399: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:13.115066: embedding
> test_pipeop_isomap.R: 2026-03-03 10:28:13.116171: DONE
> test_pipeop_isomap.R: 2026-03-03 10:28:13.255661: Isomap START
> test_pipeop_isomap.R: 2026-03-03 10:28:13.255941: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:13.276662: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:13.331146: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 10:28:13.421287: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 10:28:13.421706: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:13.449175: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:13.55343: embedding
> test_pipeop_isomap.R: 2026-03-03 10:28:13.554594: DONE
> test_pipeop_isomap.R: 2026-03-03 10:28:13.796566: Isomap START
> test_pipeop_isomap.R: 2026-03-03 10:28:13.796931: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:13.897998: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:13.936824: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 10:28:14.072361: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 10:28:14.072823: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:14.09589: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:14.295439: embedding
> test_pipeop_isomap.R: 2026-03-03 10:28:14.29655: DONE
> test_pipeop_isomap.R: 2026-03-03 10:28:14.53031: Isomap START
> test_pipeop_isomap.R: 2026-03-03 10:28:14.530598: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:14.537054: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:14.607135: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 10:28:14.753954: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-03 10:28:14.755708: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:14.786275: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:14.905606: embedding
> test_pipeop_isomap.R: 2026-03-03 10:28:14.906799: DONE
> test_pipeop_isomap.R: 2026-03-03 10:28:15.06967: Isomap START
> test_pipeop_isomap.R: 2026-03-03 10:28:15.069973: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:15.076965: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:15.146417: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 10:28:15.350105: Isomap START
> test_pipeop_isomap.R: 2026-03-03 10:28:15.350406: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:15.364164: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:15.415076: Classical Scaling
> test_pipeop_isomap.R: 2026-03-03 10:28:15.465917: Isomap START
> test_pipeop_isomap.R: 2026-03-03 10:28:15.466215: constructing knn graph
> test_pipeop_isomap.R: 2026-03-03 10:28:15.49169: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-03 10:28:15.551069: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_dictionary.R:7:3',
'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_info.R:3:1', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_smote.R:10:3', 'test_pipeop_splines.R:3:1',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'testthat.R' [159s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-02 16:01:26.914802: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:26.915483: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:26.926391: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:26.942539: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:26.988783: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:26.989215: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:26.996122: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.010592: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:27.036429: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.037014: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.050678: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.084709: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:27.086: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:27.11051: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.110941: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.126776: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.160803: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:27.162096: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:27.239744: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.240158: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.255286: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.33571: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:27.369562: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.370175: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.400858: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.563574: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:27.567403: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:27.724642: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.725072: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.732284: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.746883: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:27.776446: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.777027: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.79114: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.82513: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:27.826268: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:27.954908: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:27.955332: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:27.962962: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:27.977572: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:28.023456: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.024124: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.038666: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.07288: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:28.073899: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:28.162303: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.162708: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.169392: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.184135: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:28.243645: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.244323: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.261101: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.301707: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:28.302877: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:28.384241: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.38475: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.393798: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.411704: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:28.46269: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.463368: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.479262: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.5201: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:28.521374: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:28.619726: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.620295: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.630046: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.649573: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:28.70513: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.70582: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.723847: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.764476: embedding
> test_pipeop_isomap.R: 2026-03-02 16:01:28.765978: DONE
> test_pipeop_isomap.R: 2026-03-02 16:01:28.852414: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.852884: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.861266: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.876199: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:28.946974: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.947399: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.955157: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:28.969785: Classical Scaling
> test_pipeop_isomap.R: 2026-03-02 16:01:28.991557: Isomap START
> test_pipeop_isomap.R: 2026-03-02 16:01:28.991984: constructing knn graph
> test_pipeop_isomap.R: 2026-03-02 16:01:28.999716: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-02 16:01:29.014548: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_dictionary.R:7:3', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_copy.R:5:3',
'test_pipeop_colroles.R:6:3', 'test_pipeop_decode.R:14:3',
'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_ensemble.R:3:1', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_info.R:3:1',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_learnerpicvplus.R:2:1', 'test_pipeop_learnercv.R:3:3',
'test_pipeop_learnercv.R:43:3', 'test_pipeop_learnercv.R:73:3',
'test_pipeop_learnercv.R:92:3', 'test_pipeop_learnercv.R:141:3',
'test_pipeop_learnercv.R:157:3', 'test_pipeop_learnercv.R:203:3',
'test_pipeop_learnercv.R:249:3', 'test_pipeop_learnercv.R:278:3',
'test_pipeop_learnercv.R:332:3', 'test_pipeop_learnercv.R:359:3',
'test_pipeop_learnercv.R:389:3', 'test_pipeop_learnercv.R:399:3',
'test_pipeop_learnercv.R:432:3', 'test_pipeop_learnercv.R:472:3',
'test_pipeop_learnercv.R:481:3', 'test_pipeop_learnercv.R:498:3',
'test_pipeop_learnercv.R:506:3', 'test_pipeop_learnercv.R:530:3',
'test_pipeop_learnercv.R:554:3', 'test_pipeop_learnercv.R:634:3',
'test_pipeop_learnercv.R:654:3', 'test_pipeop_learnercv.R:669:3',
'test_pipeop_learnercv.R:754:3', 'test_pipeop_learnercv.R:799:3',
'test_pipeop_learnercv.R:827:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:2:1',
'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_spatialsign.R:3:1', 'test_pipeop_splines.R:3:1',
'test_pipeop_nmf.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_ppl.R:63:3',
'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3',
'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64