Last updated on 2025-12-21 11:50:45 CET.
| Package | ERROR | OK |
|---|---|---|
| spect | 3 | 10 |
Current CRAN status: ERROR: 3, OK: 10
Version: 1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [32s/43s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(spect)
Loading required package: futile.logger
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
>
> test_check("spect")
Loading required package: ggplot2
Loading required package: lattice
Saving _problems/test-evaluate_model-33.R
[ FAIL 1 | WARN 73 | SKIP 0 | PASS 29 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-evaluate_model.R:30:3'): evaluate_model throws an error for prediction times outside of the data window ──
Expected `... <- NULL` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 10/10 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-evaluate_model.R:30:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─spect::evaluate_model(...)
8. ├─riskRegression::Score(...)
9. └─riskRegression::Score.list(...)
10. └─riskRegression:::computePerformance(...)
11. ├─base::do.call(paste(m, response.type, sep = "."), input)
12. └─riskRegression:::Brier.survival(...)
13. ├─...[]
14. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 73 | SKIP 0 | PASS 29 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘create_synthetic_data.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘create_synthetic_data.Rmd’
--- re-building ‘modeling_with_binary_classifiers.Rmd’ using rmarkdown
Quitting from modeling_with_binary_classifiers.Rmd:96-100 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 10/10 in VECTOR_ELT
---
Backtrace:
▆
1. └─spect::evaluate_model(result, prediction_times)
2. ├─riskRegression::Score(...)
3. └─riskRegression::Score.list(...)
4. └─riskRegression:::computePerformance(...)
5. ├─base::do.call(paste(m, response.type, sep = "."), input)
6. └─riskRegression:::Brier.survival(...)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'modeling_with_binary_classifiers.Rmd' failed with diagnostics:
attempt access index 10/10 in VECTOR_ELT
--- failed re-building ‘modeling_with_binary_classifiers.Rmd’
--- re-building ‘training_synthetic_data.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘training_synthetic_data.Rmd’
SUMMARY: processing the following file failed:
‘modeling_with_binary_classifiers.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/31s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(spect)
Loading required package: futile.logger
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
>
> test_check("spect")
Loading required package: ggplot2
Loading required package: lattice
Saving _problems/test-evaluate_model-33.R
[ FAIL 1 | WARN 73 | SKIP 0 | PASS 29 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-evaluate_model.R:30:3'): evaluate_model throws an error for prediction times outside of the data window ──
Expected `... <- NULL` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 10/10 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-evaluate_model.R:30:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─spect::evaluate_model(...)
8. ├─riskRegression::Score(...)
9. └─riskRegression::Score.list(...)
10. └─riskRegression:::computePerformance(...)
11. ├─base::do.call(paste(m, response.type, sep = "."), input)
12. └─riskRegression:::Brier.survival(...)
13. ├─...[]
14. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 73 | SKIP 0 | PASS 29 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [54s/78s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(spect)
Loading required package: futile.logger
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
>
> test_check("spect")
Loading required package: ggplot2
Loading required package: lattice
Saving _problems/test-evaluate_model-33.R
[ FAIL 1 | WARN 73 | SKIP 0 | PASS 29 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-evaluate_model.R:30:3'): evaluate_model throws an error for prediction times outside of the data window ──
Expected `... <- NULL` not to throw any errors.
Actually got a <simpleError> with message:
attempt access index 10/10 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-evaluate_model.R:30:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─spect::evaluate_model(...)
8. ├─riskRegression::Score(...)
9. └─riskRegression::Score.list(...)
10. └─riskRegression:::computePerformance(...)
11. ├─base::do.call(paste(m, response.type, sep = "."), input)
12. └─riskRegression:::Brier.survival(...)
13. ├─...[]
14. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 73 | SKIP 0 | PASS 29 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘create_synthetic_data.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘create_synthetic_data.Rmd’
--- re-building ‘modeling_with_binary_classifiers.Rmd’ using rmarkdown
Quitting from modeling_with_binary_classifiers.Rmd:96-100 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 10/10 in VECTOR_ELT
---
Backtrace:
▆
1. └─spect::evaluate_model(result, prediction_times)
2. ├─riskRegression::Score(...)
3. └─riskRegression::Score.list(...)
4. └─riskRegression:::computePerformance(...)
5. ├─base::do.call(paste(m, response.type, sep = "."), input)
6. └─riskRegression:::Brier.survival(...)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'modeling_with_binary_classifiers.Rmd' failed with diagnostics:
attempt access index 10/10 in VECTOR_ELT
--- failed re-building ‘modeling_with_binary_classifiers.Rmd’
--- re-building ‘training_synthetic_data.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘training_synthetic_data.Rmd’
SUMMARY: processing the following file failed:
‘modeling_with_binary_classifiers.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang