Last updated on 2025-12-21 11:50:48 CET.
| Package | ERROR | OK |
|---|---|---|
| envalysis | 4 | 9 |
Current CRAN status: ERROR: 4, OK: 9
Version: 0.7.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(envalysis)
>
> test_check("envalysis")
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
number of blank values <= 1; LOD is estimated from the calibration curve
number of blank values <= 1; LOD is estimated from the calibration curve
number of blank values <= 1; LOD is estimated from the calibration curve
Error in stats::uniroot(rootfun, interval = c(lower, upper), object = object, :
f() values at end points not of opposite sign
Error in stats::uniroot(rootfun, interval = c(lower, upper), object = object, :
f() values at end points not of opposite sign
Saving _problems/test-calibration-159.R
Loading required package: MASS
'drc' has been loaded.
Please cite R and 'drc' if used for a publication,
for references type 'citation()' and 'citation('drc')'.
Attaching package: 'drc'
The following objects are masked from 'package:stats':
gaussian, getInitial
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 135 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-calibration.R:81:1', 'test-texture.R:62:1',
'test-weight_select.R:13:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-calibration.R:154:3'): batch calibration works as expected ─────
Error in ``[.data.table`(dt$seq, , `:=`(`Calc Conc`, inv_predict(calibration(Area ~ `Spec Conc`, .SD[Type == "Standard"]), Area, below_lod = 0)), by = .(Compound, Batch))`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-calibration.R:154:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─testthat::expect_warning(...)
8. │ └─testthat:::expect_condition_matching_(...)
9. │ └─testthat:::quasi_capture(...)
10. │ ├─testthat (local) .capture(...)
11. │ │ └─base::withCallingHandlers(...)
12. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
13. ├─testthat::expect_warning(...)
14. │ └─testthat:::expect_condition_matching_(...)
15. │ └─testthat:::quasi_capture(...)
16. │ ├─testthat (local) .capture(...)
17. │ │ └─base::withCallingHandlers(...)
18. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
19. ├─testthat::expect_warning(...)
20. │ └─testthat:::expect_condition_matching_(...)
21. │ └─testthat:::quasi_capture(...)
22. │ ├─testthat (local) .capture(...)
23. │ │ └─base::withCallingHandlers(...)
24. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
25. ├─testthat::expect_warning(...)
26. │ └─testthat:::expect_condition_matching_(...)
27. │ └─testthat:::quasi_capture(...)
28. │ ├─testthat (local) .capture(...)
29. │ │ └─base::withCallingHandlers(...)
30. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
31. ├─testthat::expect_warning(...)
32. │ └─testthat:::expect_condition_matching_(...)
33. │ └─testthat:::quasi_capture(...)
34. │ ├─testthat (local) .capture(...)
35. │ │ └─base::withCallingHandlers(...)
36. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
37. ├─...[]
38. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.7.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘calibration.Rmd’ using rmarkdown
Quitting from calibration.Rmd:122-127 [calibration]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 6/6 in VECTOR_ELT
---
Backtrace:
▆
1. ├─...[]
2. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'calibration.Rmd' failed with diagnostics:
attempt access index 6/6 in VECTOR_ELT
--- failed re-building ‘calibration.Rmd’
--- re-building ‘texture.Rmd’ using rmarkdown
--- finished re-building ‘texture.Rmd’
--- re-building ‘theme_publish.Rmd’ using rmarkdown
--- finished re-building ‘theme_publish.Rmd’
SUMMARY: processing the following file failed:
‘calibration.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.7.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(envalysis)
>
> test_check("envalysis")
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
number of blank values <= 1; LOD is estimated from the calibration curve
number of blank values <= 1; LOD is estimated from the calibration curve
number of blank values <= 1; LOD is estimated from the calibration curve
Error in stats::uniroot(rootfun, interval = c(lower, upper), object = object, :
f() values at end points not of opposite sign
Error in stats::uniroot(rootfun, interval = c(lower, upper), object = object, :
f() values at end points not of opposite sign
Saving _problems/test-calibration-159.R
Loading required package: MASS
'drc' has been loaded.
Please cite R and 'drc' if used for a publication,
for references type 'citation()' and 'citation('drc')'.
Attaching package: 'drc'
The following objects are masked from 'package:stats':
gaussian, getInitial
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 135 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-calibration.R:81:1', 'test-texture.R:62:1',
'test-weight_select.R:13:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-calibration.R:154:3'): batch calibration works as expected ─────
Error in ``[.data.table`(dt$seq, , `:=`(`Calc Conc`, inv_predict(calibration(Area ~ `Spec Conc`, .SD[Type == "Standard"]), Area, below_lod = 0)), by = .(Compound, Batch))`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-calibration.R:154:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─testthat::expect_warning(...)
8. │ └─testthat:::expect_condition_matching_(...)
9. │ └─testthat:::quasi_capture(...)
10. │ ├─testthat (local) .capture(...)
11. │ │ └─base::withCallingHandlers(...)
12. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
13. ├─testthat::expect_warning(...)
14. │ └─testthat:::expect_condition_matching_(...)
15. │ └─testthat:::quasi_capture(...)
16. │ ├─testthat (local) .capture(...)
17. │ │ └─base::withCallingHandlers(...)
18. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
19. ├─testthat::expect_warning(...)
20. │ └─testthat:::expect_condition_matching_(...)
21. │ └─testthat:::quasi_capture(...)
22. │ ├─testthat (local) .capture(...)
23. │ │ └─base::withCallingHandlers(...)
24. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
25. ├─testthat::expect_warning(...)
26. │ └─testthat:::expect_condition_matching_(...)
27. │ └─testthat:::quasi_capture(...)
28. │ ├─testthat (local) .capture(...)
29. │ │ └─base::withCallingHandlers(...)
30. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
31. ├─testthat::expect_warning(...)
32. │ └─testthat:::expect_condition_matching_(...)
33. │ └─testthat:::quasi_capture(...)
34. │ ├─testthat (local) .capture(...)
35. │ │ └─base::withCallingHandlers(...)
36. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
37. ├─...[]
38. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.7.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/39s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(envalysis)
>
> test_check("envalysis")
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
number of blank values <= 1; LOD is estimated from the calibration curve
number of blank values <= 1; LOD is estimated from the calibration curve
number of blank values <= 1; LOD is estimated from the calibration curve
Error in stats::uniroot(rootfun, interval = c(lower, upper), object = object, :
f() values at end points not of opposite sign
Error in stats::uniroot(rootfun, interval = c(lower, upper), object = object, :
f() values at end points not of opposite sign
Saving _problems/test-calibration-159.R
Loading required package: MASS
'drc' has been loaded.
Please cite R and 'drc' if used for a publication,
for references type 'citation()' and 'citation('drc')'.
Attaching package: 'drc'
The following objects are masked from 'package:stats':
gaussian, getInitial
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 135 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-calibration.R:81:1', 'test-texture.R:62:1',
'test-weight_select.R:13:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-calibration.R:154:3'): batch calibration works as expected ─────
Error in ``[.data.table`(dt$seq, , `:=`(`Calc Conc`, inv_predict(calibration(Area ~ `Spec Conc`, .SD[Type == "Standard"]), Area, below_lod = 0)), by = .(Compound, Batch))`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-calibration.R:154:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─testthat::expect_warning(...)
8. │ └─testthat:::expect_condition_matching_(...)
9. │ └─testthat:::quasi_capture(...)
10. │ ├─testthat (local) .capture(...)
11. │ │ └─base::withCallingHandlers(...)
12. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
13. ├─testthat::expect_warning(...)
14. │ └─testthat:::expect_condition_matching_(...)
15. │ └─testthat:::quasi_capture(...)
16. │ ├─testthat (local) .capture(...)
17. │ │ └─base::withCallingHandlers(...)
18. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
19. ├─testthat::expect_warning(...)
20. │ └─testthat:::expect_condition_matching_(...)
21. │ └─testthat:::quasi_capture(...)
22. │ ├─testthat (local) .capture(...)
23. │ │ └─base::withCallingHandlers(...)
24. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
25. ├─testthat::expect_warning(...)
26. │ └─testthat:::expect_condition_matching_(...)
27. │ └─testthat:::quasi_capture(...)
28. │ ├─testthat (local) .capture(...)
29. │ │ └─base::withCallingHandlers(...)
30. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
31. ├─testthat::expect_warning(...)
32. │ └─testthat:::expect_condition_matching_(...)
33. │ └─testthat:::quasi_capture(...)
34. │ ├─testthat (local) .capture(...)
35. │ │ └─base::withCallingHandlers(...)
36. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
37. ├─...[]
38. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.7.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘calibration.Rmd’ using rmarkdown
Quitting from calibration.Rmd:122-127 [calibration]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 6/6 in VECTOR_ELT
---
Backtrace:
▆
1. ├─...[]
2. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'calibration.Rmd' failed with diagnostics:
attempt access index 6/6 in VECTOR_ELT
--- failed re-building ‘calibration.Rmd’
--- re-building ‘texture.Rmd’ using rmarkdown
--- finished re-building ‘texture.Rmd’
--- re-building ‘theme_publish.Rmd’ using rmarkdown
--- finished re-building ‘theme_publish.Rmd’
SUMMARY: processing the following file failed:
‘calibration.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.7.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/53s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(envalysis)
>
> test_check("envalysis")
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
number of blank values <= 1; LOD is estimated from the calibration curve
number of blank values <= 1; LOD is estimated from the calibration curve
number of blank values <= 1; LOD is estimated from the calibration curve
Error in stats::uniroot(rootfun, interval = c(lower, upper), object = object, :
f() values at end points not of opposite sign
Error in stats::uniroot(rootfun, interval = c(lower, upper), object = object, :
f() values at end points not of opposite sign
Saving _problems/test-calibration-159.R
Loading required package: MASS
'drc' has been loaded.
Please cite R and 'drc' if used for a publication,
for references type 'citation()' and 'citation('drc')'.
Attaching package: 'drc'
The following objects are masked from 'package:stats':
gaussian, getInitial
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 135 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-calibration.R:81:1', 'test-texture.R:62:1',
'test-weight_select.R:13:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-calibration.R:154:3'): batch calibration works as expected ─────
Error in ``[.data.table`(dt$seq, , `:=`(`Calc Conc`, inv_predict(calibration(Area ~ `Spec Conc`, .SD[Type == "Standard"]), Area, below_lod = 0)), by = .(Compound, Batch))`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-calibration.R:154:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─testthat::expect_warning(...)
8. │ └─testthat:::expect_condition_matching_(...)
9. │ └─testthat:::quasi_capture(...)
10. │ ├─testthat (local) .capture(...)
11. │ │ └─base::withCallingHandlers(...)
12. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
13. ├─testthat::expect_warning(...)
14. │ └─testthat:::expect_condition_matching_(...)
15. │ └─testthat:::quasi_capture(...)
16. │ ├─testthat (local) .capture(...)
17. │ │ └─base::withCallingHandlers(...)
18. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
19. ├─testthat::expect_warning(...)
20. │ └─testthat:::expect_condition_matching_(...)
21. │ └─testthat:::quasi_capture(...)
22. │ ├─testthat (local) .capture(...)
23. │ │ └─base::withCallingHandlers(...)
24. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
25. ├─testthat::expect_warning(...)
26. │ └─testthat:::expect_condition_matching_(...)
27. │ └─testthat:::quasi_capture(...)
28. │ ├─testthat (local) .capture(...)
29. │ │ └─base::withCallingHandlers(...)
30. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
31. ├─testthat::expect_warning(...)
32. │ └─testthat:::expect_condition_matching_(...)
33. │ └─testthat:::quasi_capture(...)
34. │ ├─testthat (local) .capture(...)
35. │ │ └─base::withCallingHandlers(...)
36. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
37. ├─...[]
38. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc