To cite bayesammi in publications use:
Yaseen M, Crossa J, Perez-Elizalde S, Jarquin D, Cotes JM, Viele K, Liu G, Cornelius PL, Abadillo Velasco JG (2026). bayesammi: Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model. R package version 1.0.0 (first released 2018), https://CRAN.R-project.org/package=bayesammi.
and for the methods (bam_cite() gives the references of a single analysis):
Crossa J, Perez-Elizalde S, Jarquin D, Cotes JM, Viele K, Liu G, Cornelius PL (2011). “Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model.” Crop Science, 51(4), 1458–1469. doi:10.2135/cropsci2010.06.0343.
Perez-Elizalde S, Jarquin D, Crossa J (2012). “A General Bayesian Estimation Method of Linear-Bilinear Models Applied to Plant Breeding Trials with Genotype x Environment Interaction.” Journal of Agricultural, Biological, and Environmental Statistics, 17(1), 15–37. doi:10.1007/s13253-011-0063-9.
Dias KOG, dos Santos JPR, Krause MD, Piepho H, Guimaraes LJM, Pastina MM, Garcia AAF (2022). “Leveraging Probability Concepts for Cultivar Recommendation in Multi-Environment Trials.” Theoretical and Applied Genetics. doi:10.1007/s00122-022-04041-y.
Finlay KW, Wilkinson GN (1963). “The Analysis of Adaptation in a Plant-Breeding Programme.” Australian Journal of Agricultural Research, 14(6), 742–754. doi:10.1071/AR9630742.
Eberhart SA, Russell WA (1966). “Stability Parameters for Comparing Varieties.” Crop Science, 6(1), 36–40. doi:10.2135/cropsci1966.0011183X000600010011x.
Shukla GK (1972). “Some Statistical Aspects of Partitioning Genotype-Environmental Components of Variability.” Heredity, 29(2), 237–245. doi:10.1038/hdy.1972.87.
Lian L, de los Campos G (2016). “FW: An R Package for Finlay-Wilkinson Regression that Incorporates Genomic/Pedigree Information and Covariance Structures Between Environments.” G3: Genes, Genomes, Genetics, 6(3), 589–597. doi:10.1534/g3.115.026328.
de Oliveira TRA, de Carvalho HWL, Nascimento M, Costa EFN, do Amaral Junior AT, Gravina GA, de Carvalho Filho JLS (2018). “The Eberhart and Russell's Bayesian Method Used as an Instrument to Select Maize Hybrids.” Euphytica, 214, 64. doi:10.1007/s10681-018-2146-y.
Edwards JW, Jannink J (2006). “Bayesian Modeling of Heterogeneous Error and Genotype x Environment Interaction Variances.” Crop Science, 46(2), 820. doi:10.2135/cropsci2005.0164.
Eskridge KM (1990). “Selection of Stable Cultivars Using a Safety-First Rule.” Crop Science, 30, 369–374.
Wricke G (1962). “Über eine Methode zur Erfassung der ökologischen Streubreite in Feldversuchen.” Zeitschrift für Pflanzenzüchtung, 47, 92–96.
Lin CS, Binns MR (1988). “A Superiority Measure of Cultivar Performance for Cultivar x Location Data.” Canadian Journal of Plant Science, 68(1), 193–198. doi:10.4141/cjps88-018.
Annicchiarico P (1992). “Cultivar Adaptation and Recommendation from Alfalfa Trials in Northern Italy.” Journal of Genetics and Breeding, 46, 269–278.
Purchase JL, Hatting H, van Deventer CS (2000). “Genotype x Environment Interaction of Winter Wheat (Triticum aestivum L.) in South Africa: II. Stability Analysis of Yield Performance.” South African Journal of Plant and Soil, 17(3), 101–107.
Sneller CH, Kilgore-Norquest L, Dombek D (1997). “Repeatability of Yield Stability Statistics in Soybean.” Crop Science, 37(2), 383–390.
Zobel RW (1994). “Stress Resistance and Root Systems.” In Proceedings of the Workshop on Adaptation of Plants to Soil Stress, series INTSORMIL Publication 94-2, 80–99.
Zali H, Farshadfar E, Sabaghpour SH, Karimizadeh R (2012). “Evaluation of Genotype x Environment Interaction in Chickpea Using Measures of Stability from AMMI Model.” Annals of Biological Research, 3(7), 3126–3136.
Olivoto T, Lucio ADC, da Silva JAG, Marchioro VS, de Souza VQ, Jost E (2019). “Mean Performance and Stability in Multi-Environment Trials I: Combining Features of AMMI and BLUP Techniques.” Agronomy Journal, 111(6), 2949–2960. doi:10.2134/agronj2019.03.0220.
Corresponding BibTeX entries:
@Manual{bayesammi,
title = {{bayesammi}: Bayesian Estimation of the Additive Main
Effects and Multiplicative Interaction Model},
author = {Muhammad Yaseen and Jose Crossa and Sergio Perez-Elizalde
and Diego Jarquin and Jose Miguel Cotes and Kert Viele and
Genzhou Liu and Paul L. Cornelius and Julian Garcia {Abadillo
Velasco}},
year = {2026},
note = {R package version 1.0.0 (first released 2018)},
url = {https://CRAN.R-project.org/package=bayesammi},
}
@Article{Crossa2011,
title = {Bayesian Estimation of the Additive Main Effects and
Multiplicative Interaction Model},
author = {Jose Crossa and Sergio Perez-Elizalde and Diego Jarquin
and Jose Miguel Cotes and Kert Viele and Genzhou Liu and Paul L.
Cornelius},
journal = {Crop Science},
year = {2011},
volume = {51},
number = {4},
pages = {1458--1469},
doi = {10.2135/cropsci2010.06.0343},
}
@Article{PerezElizalde2012,
title = {A General {Bayesian} Estimation Method of Linear-Bilinear
Models Applied to Plant Breeding Trials with Genotype x
Environment Interaction},
author = {Sergio Perez-Elizalde and Diego Jarquin and Jose Crossa},
journal = {Journal of Agricultural, Biological, and Environmental
Statistics},
year = {2012},
volume = {17},
number = {1},
pages = {15--37},
doi = {10.1007/s13253-011-0063-9},
}
@Article{Dias2022,
title = {Leveraging Probability Concepts for Cultivar
Recommendation in Multi-Environment Trials},
author = {K. O. G. Dias and J. P. R. {dos Santos} and M. D. Krause
and H.-P. Piepho and L. J. M. Guimaraes and M. M. Pastina and A.
A. F. Garcia},
journal = {Theoretical and Applied Genetics},
year = {2022},
doi = {10.1007/s00122-022-04041-y},
}
@Article{FinlayWilkinson1963,
title = {The Analysis of Adaptation in a Plant-Breeding Programme},
author = {K. W. Finlay and G. N. Wilkinson},
journal = {Australian Journal of Agricultural Research},
year = {1963},
volume = {14},
number = {6},
pages = {742--754},
doi = {10.1071/AR9630742},
}
@Article{EberhartRussell1966,
title = {Stability Parameters for Comparing Varieties},
author = {S. A. Eberhart and W. A. Russell},
journal = {Crop Science},
year = {1966},
volume = {6},
number = {1},
pages = {36--40},
doi = {10.2135/cropsci1966.0011183X000600010011x},
}
@Article{Shukla1972,
title = {Some Statistical Aspects of Partitioning
Genotype-Environmental Components of Variability},
author = {G. K. Shukla},
journal = {Heredity},
year = {1972},
volume = {29},
number = {2},
pages = {237--245},
doi = {10.1038/hdy.1972.87},
}
@Article{LianCampos2016,
title = {{FW}: An {R} Package for {Finlay-Wilkinson} Regression
that Incorporates Genomic/Pedigree Information and Covariance
Structures Between Environments},
author = {L. Lian and G. {de los Campos}},
journal = {G3: Genes, Genomes, Genetics},
year = {2016},
volume = {6},
number = {3},
pages = {589--597},
doi = {10.1534/g3.115.026328},
}
@Article{Oliveira2018,
title = {The {Eberhart} and {Russell}'s {Bayesian} Method Used as
an Instrument to Select Maize Hybrids},
author = {T. R. A. {de Oliveira} and H. W. L. {de Carvalho} and M.
Nascimento and E. F. N. Costa and A. T. {do Amaral Junior} and G.
A. Gravina and J. L. S. {de Carvalho Filho}},
journal = {Euphytica},
year = {2018},
volume = {214},
pages = {64},
doi = {10.1007/s10681-018-2146-y},
}
@Article{EdwardsJannink2006,
title = {{Bayesian} Modeling of Heterogeneous Error and Genotype x
Environment Interaction Variances},
author = {J. W. Edwards and J.-L. Jannink},
journal = {Crop Science},
year = {2006},
volume = {46},
number = {2},
pages = {820},
doi = {10.2135/cropsci2005.0164},
}
@Article{Eskridge1990,
title = {Selection of Stable Cultivars Using a Safety-First Rule},
author = {K. M. Eskridge},
journal = {Crop Science},
year = {1990},
volume = {30},
pages = {369--374},
}
@Article{Wricke1962,
title = {{\"U}ber eine Methode zur Erfassung der {\"o}kologischen
Streubreite in Feldversuchen},
author = {G. Wricke},
journal = {Zeitschrift f{\"u}r Pflanzenz{\"u}chtung},
year = {1962},
volume = {47},
pages = {92--96},
}
@Article{LinBinns1988,
title = {A Superiority Measure of Cultivar Performance for Cultivar
x Location Data},
author = {C. S. Lin and M. R. Binns},
journal = {Canadian Journal of Plant Science},
year = {1988},
volume = {68},
number = {1},
pages = {193--198},
doi = {10.4141/cjps88-018},
}
@Article{Annicchiarico1992,
title = {Cultivar Adaptation and Recommendation from Alfalfa Trials
in {Northern Italy}},
author = {P. Annicchiarico},
journal = {Journal of Genetics and Breeding},
year = {1992},
volume = {46},
pages = {269--278},
}
@Article{Purchase2000,
title = {Genotype x Environment Interaction of Winter Wheat
({Triticum aestivum} {L}.) in South Africa: {II}. Stability
Analysis of Yield Performance},
author = {J. L. Purchase and H. Hatting and C. S. {van Deventer}},
journal = {South African Journal of Plant and Soil},
year = {2000},
volume = {17},
number = {3},
pages = {101--107},
}
@Article{Sneller1997,
title = {Repeatability of Yield Stability Statistics in Soybean},
author = {C. H. Sneller and L. Kilgore-Norquest and D. Dombek},
journal = {Crop Science},
year = {1997},
volume = {37},
number = {2},
pages = {383--390},
}
@InProceedings{Zobel1994,
title = {Stress Resistance and Root Systems},
author = {R. W. Zobel},
booktitle = {Proceedings of the Workshop on Adaptation of Plants to
Soil Stress},
series = {INTSORMIL Publication 94-2},
year = {1994},
pages = {80--99},
publisher = {Institute of Agriculture and Natural Resources,
University of Nebraska-Lincoln},
}
@Article{Zali2012,
title = {Evaluation of Genotype x Environment Interaction in
Chickpea Using Measures of Stability from {AMMI} Model},
author = {H. Zali and E. Farshadfar and S. H. Sabaghpour and R.
Karimizadeh},
journal = {Annals of Biological Research},
year = {2012},
volume = {3},
number = {7},
pages = {3126--3136},
}
@Article{Olivoto2019,
title = {Mean Performance and Stability in Multi-Environment Trials
{I}: Combining Features of {AMMI} and {BLUP} Techniques},
author = {T. Olivoto and A. D. C. Lucio and J. A. G. {da Silva} and
V. S. Marchioro and V. Q. {de Souza} and E. Jost},
journal = {Agronomy Journal},
year = {2019},
volume = {111},
number = {6},
pages = {2949--2960},
doi = {10.2134/agronj2019.03.0220},
}