phylopred: Predicting Species Interactions from Phylogenetic Distance
Tools to model and predict host-parasite (and other pairwise
species) interactions from phylogenetic distance under presence-only
data. Provides pairwise host-sharing logistic models with
cluster-aware bootstrap and slope comparison between clades,
presence-only performance metrics (a threshold efficiency metric and
a phylogenetic partial receiver operating characteristic (ROC) adapted
from Peterson, Papes and Soberon (2008)
<doi:10.1016/j.ecolmodel.2007.11.008>), positive-unlabeled
host prediction, and leave-hosts-out validation. Methods build on
Robles-Fernandez and Lira-Noriega (2017) <doi:10.3389/fams.2017.00017>.
| Version: |
0.1.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
graphics, stats, utils, xplus |
| Suggests: |
ape, cofid, knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: |
2026-10-14 |
| DOI: |
10.32614/CRAN.package.phylopred (may not be active yet) |
| Author: |
Angel Robles 
[aut, cre] |
| Maintainer: |
Angel Robles <a.l.robles.fernandez at gmail.com> |
| BugReports: |
https://github.com/alrobles/phylopred/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/alrobles/phylopred,
https://alrobles.github.io/phylopred/ |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
phylopred results |
Documentation:
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