rdiversity 2.3.0
- Fixed
repartition() for non-phylogenetic
metacommunities: it previously passed a bare similarity matrix to
metacommunity(), which has not accepted matrices for a
while
- Added tests for
gen2dist(), inddiv(),
repartition() and the high-level diversity-measure
wrappers
- Corrected the
gen2dist() documentation
- Removed the vendored
binary.R library; the taxonomic
and genetic bit handling is now implemented directly in base R
- Breaking:
as.binary() (and its
associated S3 methods) is no longer exported, as it was only ever an
internal implementation detail
- Removed unused
stats/utils imports
- Dropped the
reshape2 dependency (superseded upstream);
the melt() calls in
inddiv()/subdiv()/metadiv() are
replaced by a small internal base-R helper
- Migrated continuous integration from Travis CI and AppVeyor to
GitHub Actions
- Added
lint, pr-commands and R-hub v2
(rhub) workflows
- Formatted the codebase with
styler and added a
.lintr configuration so the package passes
lintr::lint_package() cleanly
- Added a
cran-comments.md template and tidied the
repository (ignore rules, build artefacts).
rdiversity 2.2.0
- Added internal support for binary (base-2) number objects, used when
encoding taxonomic and genetic data as similarities
(
taxid(), taxvec(),
taxmask()).
- Fixed CRAN check notes and corrected the package URL and maintainer
field.
rdiversity 2.1.3
- Add dependency on markdown to fix win-builder warning
rdiversity 2.1.2
- Add vignette
- Remove deprecated functionality -
metacommunity() no
longer allows matrices as a similarity argument
- Increase unit tests coverage
rdiversity 2.0
- Standardised metacommunity input
- New functions added to calculate genetic similarity matrices
rdiversity 1.2.1
- Fix problems that occur when user doesn’t have row names in the
partition object
- Update citation
rdiversity 1.2
- Allow partition types to be input in any order, or with missing or
additional types
- Tests added for new functionality
rdiversity 1.1
- Removed redundant argument
chainsaw(depth)
- Renamed
chainsaw(interval) to
chainsaw(depth)
- Minor edits to documentation
rdiversity 1.0
- Initial submission to CRAN