Last updated on 2025-12-21 17:51:24 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [92s/195s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.624, system: 0.066, elapsed: 2.960 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.751, system: 0.363, elapsed: 14.696 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.033, elapsed: 0.447 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.260, system: 0.405, elapsed: 7.843 seconds]
Computing values for grid cells...
... done. [user: 0.213, system: 0.024, elapsed: 0.751 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.648, system: 0.938, elapsed: 27.789 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.879, system: 0.117, elapsed: 4.545 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.913, system: 0.373, elapsed: 20.511 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.212, system: 0.031, elapsed: 0.648 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.359, system: 0.418, elapsed: 7.141 seconds]
Computing values for grid cells...
... done. [user: 0.196, system: 0.021, elapsed: 0.409 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.170, system: 1.027, elapsed: 34.802 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.866, system: 0.116, elapsed: 3.739 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.992, system: 0.427, elapsed: 33.463 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.026, elapsed: 0.596 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.341, system: 0.424, elapsed: 12.575 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.011, elapsed: 0.392 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.305, system: 0.341, elapsed: 2.312 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.624, system: 1.633, elapsed: 55.303 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.832, system: 0.113, elapsed: 6.171 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.874, system: 0.341, elapsed: 21.805 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.024, elapsed: 0.674 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.100, system: 0.281, elapsed: 9.325 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.008, elapsed: 0.392 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.271, system: 0.844, elapsed: 24.842 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 28.152, system: 1.653, elapsed: 64.861 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [91s/236s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.735, system: 0.080, elapsed: 4.926 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.841, system: 0.193, elapsed: 26.958 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.206, system: 0.025, elapsed: 0.670 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.997, system: 0.306, elapsed: 11.388 seconds]
Computing values for grid cells...
... done. [user: 0.192, system: 0.012, elapsed: 0.544 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.569, system: 0.689, elapsed: 46.233 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.696, system: 0.060, elapsed: 4.595 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.737, system: 0.197, elapsed: 24.332 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.206, system: 0.026, elapsed: 0.633 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.123, system: 0.353, elapsed: 11.777 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.012, elapsed: 0.532 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.584, system: 0.912, elapsed: 44.027 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.744, system: 0.088, elapsed: 4.995 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.856, system: 0.252, elapsed: 28.153 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.031, elapsed: 0.745 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.019, system: 0.335, elapsed: 13.203 seconds]
Computing values for grid cells...
... done. [user: 0.188, system: 0.012, elapsed: 0.525 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.209, system: 0.365, elapsed: 2.688 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.996, system: 1.460, elapsed: 53.459 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.777, system: 0.079, elapsed: 4.703 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.952, system: 0.331, elapsed: 27.432 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.031, elapsed: 0.590 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.933, system: 0.319, elapsed: 10.266 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.008, elapsed: 0.563 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.404, system: 1.109, elapsed: 30.785 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 28.214, system: 2.348, elapsed: 77.411 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64